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Items: 1 to 20 of 39

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes
Wen-Chuan Hsieh, Benjamin M. Sutter, Holly Ruess, Spencer D. Barnes, Venkat S. Malladi, Benjamin P. Tu
Mol Cell. Author manuscript; available in PMC 2023 Jan 6.
Published in final edited form as: Mol Cell. 2022 Jan 6; 82(1): 60–74.e5. doi: 10.1016/j.molcel.2021.12.015
PMCID:
PMC8794035
AbstractArticlePDF–2.9M
5.
Mechanisms coordinating ribosomal protein gene transcription in response to stress
Sevil Zencir, Daniel Dilg, Maria Paula Rueda, David Shore, Benjamin Albert
Nucleic Acids Res. 2020 Nov 18; 48(20): 11408–11420. Published online 2020 Oct 21. doi: 10.1093/nar/gkaa852
PMCID:
PMC7672434
AbstractArticlePDF–3.6M
6.
Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME
Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy
Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317
PMCID:
PMC6648895
AbstractArticlePDF–14M
7.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K
8.
A ribosome assembly stress response regulates transcription to maintain proteome homeostasis
Benjamin Albert, Isabelle C Kos-Braun, Anthony K Henras, Christophe Dez, Maria Paula Rueda, Xu Zhang, Olivier Gadal, Martin Kos, David Shore
eLife. 2019; 8: e45002. Published online 2019 May 24. doi: 10.7554/eLife.45002
PMCID:
PMC6579557
AbstractArticlePDF–5.4M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
DNA damage regulates direct association of TOR kinase with the RNA polymerase II–transcribed HMO1 gene
Arvind Panday, Ashish Gupta, Kavitha Srinivasa, Lijuan Xiao, Mathew D. Smith, Anne Grove
Mol Biol Cell. 2017 Sep 1; 28(18): 2449–2459. doi: 10.1091/mbc.E17-01-0024
PMCID:
PMC5576907
AbstractArticlePDF–3.6M
11.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
12.
Molecular mechanisms of ribosomal protein gene coregulation
Rohit Reja, Vinesh Vinayachandran, Sujana Ghosh, B. Franklin Pugh
Genes Dev. 2015 Sep 15; 29(18): 1942–1954. doi: 10.1101/gad.268896.115
PMCID:
PMC4579351
AbstractArticlePDF–1.9M
13.
Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription
Britta Knight, Slawomir Kubik, Bhaswar Ghosh, Maria Jessica Bruzzone, Marcel Geertz, Victoria Martin, Nicolas Dénervaud, Philippe Jacquet, Burak Ozkan, Jacques Rougemont, Sebastian J. Maerkl, Félix Naef, David Shore
Genes Dev. 2014 Aug 1; 28(15): 1695–1709. doi: 10.1101/gad.244434.114
Correction in:
Genes Dev. 2014 Oct 1; 28(19): 2188.
PMCID:
PMC4117944
AbstractArticlePDF–1.1M
14.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
15.
Gcn5 and sirtuins regulate acetylation of the ribosomal protein transcription factor Ifh1
Michael Downey, Britta Knight, Ajay A. Vashisht, Charles A. Seller, James A. Wohlschlegel, David Shore, David P. Toczyski
Curr Biol. Author manuscript; available in PMC 2014 Sep 9.
Published in final edited form as: Curr Biol. 2013 Sep 9; 23(17): 1638–1648. Published online 2013 Aug 22. doi: 10.1016/j.cub.2013.06.050
PMCID:
PMC3982851
AbstractArticlePDF–4.9M
16.
Transcription Factor Substitution during the Evolution of Fungal Ribosome Regulation
Hervé Hogues, Hugo Lavoie, Adnane Sellam, Maria Mangos, Terry Roemer, Enrico Purisima, André Nantel, Malcolm Whiteway
Mol Cell. Author manuscript; available in PMC 2013 Nov 22.
Published in final edited form as: Mol Cell. 2008 Mar 14; 29(5): 552–562. doi: 10.1016/j.molcel.2008.02.006
PMCID:
PMC3838363
AbstractArticlePDF–1.6M
17.
Mapping the functional yeast ABC transporter interactome
Jamie Snider, Asad Hanif, Mid Eum Lee, Ke Jin, Analyn R. Yu, Chris Graham, Matthew Chuk, Dunja Damjanovic, Marta Wierzbicka, Priscilla Tang, Dina Balderes, Victoria Wong, Matthew Jessulat, Katelyn D. Darowski, Bryan-Joseph San Luis, Igor Shevelev, Stephen L Sturley, Charles Boone, Jack F. Greenblatt, Zhaolei Zhang, Christian M. Paumi, Mohan Babu, Hay-Oak Park, Susan Michaelis, Igor Stagljar
Nat Chem Biol. Author manuscript; available in PMC 2014 Mar 1.
Published in final edited form as: Nat Chem Biol. 2013 Sep; 9(9): 565–572. Published online 2013 Jul 7. doi: 10.1038/nchembio.1293
PMCID:
PMC3835492
AbstractArticlePDF–1.2M
18.
Integration of multiple nutrient cues and regulation of lifespan by ribosomal transcription factor Ifh1p
Ling Cai, Mark A. McCormick, Brian K. Kennedy, Benjamin P. Tu
Cell Rep. Author manuscript; available in PMC 2013 Oct 8.
Published in final edited form as: Cell Rep. 2013 Sep 26; 4(6): 1063–1071. Published online 2013 Sep 12. doi: 10.1016/j.celrep.2013.08.016
PMCID:
PMC3792855
AbstractArticlePDF–3.1M
19.
Competition between pre-mRNAs for the splicing machinery drives global regulation of splicing
Elizabeth M. Munding, Lily Shiue, Sol Katzman, John Paul Donohue, Manuel Ares, Jr.
Mol Cell. Author manuscript; available in PMC 2014 Aug 8.
Published in final edited form as: Mol Cell. 2013 Aug 8; 51(3): 338–348. Published online 2013 Jul 25. doi: 10.1016/j.molcel.2013.06.012
PMCID:
PMC3771316
AbstractArticlePDF–1.4M
20.
Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation
Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez
PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086
PMCID:
PMC3764036
AbstractArticlePDF–496K

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