PMC Links for GEO Profiles (Select 23186287) - PMC

Ying Zhang, Xuemei Xie, Pourya Naderi Yeganeh, Dian-Jang Lee, David Valle-Garcia, Karla F. Meza-Sosa, Caroline Junqueira, Jiayu Su, Hongbo R. Luo, Winston Hide, Judy Lieberman

Proc Natl Acad Sci U S A. 2021 Mar 2; 118(9): e2022830118. Published online 2021 Feb 24. doi: 10.1073/pnas.2022830118

PMCID:: PMC7936362

Abstract Article PDF–2.6M

Select item 75665224.

UPF2 leads to degradation of dendritically-targeted mRNAs to regulate synaptic plasticity and cognitive function

Michael Notaras, Megan Allen, Francesco Longo, Nicole Volk, Miklos Toth, Noo Li Jeon, Eric Klann, Dilek Colak

Mol Psychiatry. Author manuscript; available in PMC 2020 Dec 5.

Published in final edited form as: Mol Psychiatry. 2020 Dec; 25(12): 3360–3379. Published online 2019 Oct 21. doi: 10.1038/s41380-019-0547-5

PMCID:: PMC7566522

Abstract Article PDF–1.3M

Select item 75299605.

Developmental attenuation of neuronal apoptosis by neural specific splicing of Bak1 microexon

Lin Lin, Min Zhang, Peter Stoilov, Liang Chen, Sika Zheng

Neuron. Author manuscript; available in PMC 2021 Sep 23.

Published in final edited form as: Neuron. 2020 Sep 23; 107(6): 1180–1196.e8. Published online 2020 Jul 24. doi: 10.1016/j.neuron.2020.06.036

PMCID:: PMC7529960

Abstract Article PDF–2.4M

Select item 73127566.

Inhibition of Upf2-Dependent Nonsense-Mediated Decay Leads to Behavioral and Neurophysiological Abnormalities by Activating the Immune Response

Jennifer L. Johnson, Loredana Stoica, Yuwei Liu, Ping Jun Zhu, Abhisek Bhattacharya, Shelly A. Buffington, Redwan Huq, N. Tony Eissa, Ola Larsson, Bo T. Porse, Deepti Domingo, Urwah Nawaz, Renee Carroll, Lachlan Jolly, Tom S. Scerri, Hyung-Goo Kim, Amanda Brignell, Matthew J. Coleman, Ruth Braden, Usha Kini, Victoria Jackson, Anne Baxter, Melanie Bahlo, Ingrid E. Scheffer, David J. Amor, Michael S. Hildebrand, Penelope E. Bonnen, Christine Beeton, Jozef Gecz, Angela T. Morgan, Mauro Costa-Mattioli

Neuron. Author manuscript; available in PMC 2020 Jun 24.

Published in final edited form as: Neuron. 2019 Nov 20; 104(4): 665–679.e8. Published online 2019 Oct 1. doi: 10.1016/j.neuron.2019.08.027

PMCID:: PMC7312756

Abstract Article PDF–2.5M

Select item 64201297.

A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis

Marcos Morgan, Yuka Kabayama, Christian Much, Ivayla Ivanova, Monica Di Giacomo, Tatsiana Auchynnikava, Jack Michael Monahan, Dimitrios Michael Vitsios, Lina Vasiliauskaitė, Stefano Comazzetto, Juri Rappsilber, Robin Campbell Allshire, Bo Torben Porse, Anton James Enright, Dónal O’Carroll

Cell Res. 2019 Mar; 29(3): 221–232. Published online 2019 Jan 7. doi: 10.1038/s41422-018-0128-1

PMCID:: PMC6420129

Abstract Article PDF–2.9M

Select item 58037798.

Nonsense in the testis: multiple roles for nonsense-mediated decay revealed in male reproduction

Clinton C. MacDonald, Petar N. Grozdanov

Biol Reprod. 2017 May; 96(5): 939–947. Published online 2017 Apr 22. doi: 10.1093/biolre/iox033

PMCID:: PMC5803779

Abstract Article PDF–1.3M

Select item 48582259.

UPF2-Dependent Nonsense-Mediated mRNA Decay Pathway Is Essential for Spermatogenesis by Selectively Eliminating Longer 3'UTR Transcripts

Jianqiang Bao, Kristoffer Vitting-Seerup, Johannes Waage, Chong Tang, Ying Ge, Bo T. Porse, Wei Yan

PLoS Genet. 2016 May; 12(5): e1005863. Published online 2016 May 5. doi: 10.1371/journal.pgen.1005863

PMCID:: PMC4858225

Abstract Article PDF–20M

Select item 485815810.

Chromatoid Body Protein TDRD6 Supports Long 3’ UTR Triggered Nonsense Mediated mRNA Decay

Grigorios Fanourgakis, Mathias Lesche, Müge Akpinar, Andreas Dahl, Rolf Jessberger

PLoS Genet. 2016 May; 12(5): e1005857. Published online 2016 May 5. doi: 10.1371/journal.pgen.1005857

PMCID:: PMC4858158

Abstract Article PDF–8.8M

Select item 447539811.

Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay

Tangliang Li, Yue Shi, Pei Wang, Luis Miguel Guachalla, Baofa Sun, Tjard Joerss, Yu-Sheng Chen, Marco Groth, Anja Krueger, Matthias Platzer, Yun-Gui Yang, Karl Lenhard Rudolph, Zhao-Qi Wang

EMBO J. 2015 Jun 12; 34(12): 1630–1647. Published online 2015 Mar 14. doi: 10.15252/embj.201489947

PMCID:: PMC4475398

Abstract Article PDF–4.1M

Select item 430283812.

UPF2, a nonsense-mediated mRNA decay factor, is required for prepubertal Sertoli cell development and male fertility by ensuring fidelity of the transcriptome

Jianqiang Bao, Chong Tang, Shuiqiao Yuan, Bo T. Porse, Wei Yan

Development. 2015 Jan 15; 142(2): 352–362. doi: 10.1242/dev.115642

PMCID:: PMC4302838

Abstract Article

Select item 368548713.

Regulation of Axon Guidance by Compartmentalized Nonsense-Mediated mRNA Decay

Dilek Colak, Sheng-Jian Ji, Bo T. Porse, Samie R. Jaffrey

Cell. Author manuscript; available in PMC 2014 Jun 6.

Published in final edited form as: Cell. 2013 Jun 6; 153(6): 1252–1265. doi: 10.1016/j.cell.2013.04.056

PMCID:: PMC3685487

Abstract Article PDF–4.7M

Select item 328839814.

Psd-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2

Sika Zheng, Erin E. Gray, Geetanjali Chawla, Bo Torben Porse, Thomas J. O’Dell, Douglas L. Black

Nat Neurosci. Author manuscript; available in PMC 2012 Sep 1.

Published in final edited form as: Nat Neurosci. 2012 Mar; 15(3): 381–S1. Published online 2012 Jan 15. doi: 10.1038/nn.3026

PMCID:: PMC3288398

Abstract Article PDF–1.6M

Select item 317805915.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253416.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 290651217.

UPF2 Is a Critical Regulator of Liver Development, Function and Regeneration

Lina A. Thoren, Gitte A. Nørgaard, Joachim Weischenfeldt, Johannes Waage, Janus S. Jakobsen, Inge Damgaard, Frida C. Bergström, Anna M. Blom, Rehannah Borup, Hanne Cathrine Bisgaard, Bo T. Porse

PLoS One. 2010; 5(7): e11650. Published online 2010 Jul 19. doi: 10.1371/journal.pone.0011650

PMCID:: PMC2906512

Abstract Article PDF–10M

Select item 255627018.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 237719219.

NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements

Joachim Weischenfeldt, Inge Damgaard, David Bryder, Kim Theilgaard-Mönch, Lina A. Thoren, Finn Cilius Nielsen, Sten Eirik W. Jacobsen, Claus Nerlov, Bo Torben Porse

Genes Dev. 2008 May 15; 22(10): 1381–1396. doi: 10.1101/gad.468808

PMCID:: PMC2377192

Abstract Article PDF–1.7M

Select item 163680320.

Upf1/Upf2 Regulation of 3′ Untranslated Region Splice Variants of AUF1 Links Nonsense-Mediated and A+U-Rich Element-Mediated mRNA Decay

Lili Banihashemi, Gerald M. Wilson, Neha Das, Gary Brewer

Mol Cell Biol. 2006 Dec; 26(23): 8743–8754. Published online 2006 Sep 25. doi: 10.1128/MCB.02251-05

PMCID:: PMC1636803

Abstract Article PDF–545K

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