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Select item 110241851.

The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis

Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger

Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7

PMCID:: PMC11024185

Abstract Article PDF–7.4M

Select item 107115592.

Elevated MSH2 MSH3 expression interferes with DNA metabolism in vivo

Melisa Medina-Rivera, Samantha Phelps, Madhumita Sridharan, Jordan Becker, Natalie A Lamb, Charanya Kumar, Mark D Sutton, Anja Bielinsky, Lata Balakrishnan, Jennifer A Surtees

Nucleic Acids Res. 2023 Dec 11; 51(22): 12185–12206. Published online 2023 Nov 1. doi: 10.1093/nar/gkad934

PMCID:: PMC10711559

Abstract Article PDF–3.2M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 101645714.

Widely spaced and divergent inverted repeats become a potent source of chromosomal rearrangements in long single-stranded DNA regions

Anissia Ait Saada, Wenying Guo, Alex B Costa, Jiaxin Yang, Jianrong Wang, Kirill S Lobachev

Nucleic Acids Res. 2023 May 8; 51(8): 3722–3734. Published online 2023 Mar 15. doi: 10.1093/nar/gkad153

PMCID:: PMC10164571

Abstract Article PDF–4.4M

Select item 96733525.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 93392936.

Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes

Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees

Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092

PMCID:: PMC9339293

Abstract Article PDF–7.9M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85710638.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 78651289.

Replication-independent instability of Friedreich’s ataxia GAA repeats during chronological aging

Alexander J. Neil, Julia A. Hisey, Ishtiaque Quasem, Ryan J. McGinty, Marcin Hitczenko, Alexandra N. Khristich, Sergei M. Mirkin

Proc Natl Acad Sci U S A. 2021 Feb 2; 118(5): e2013080118. Published online 2021 Jan 25. doi: 10.1073/pnas.2013080118

PMCID:: PMC7865128

Abstract Article PDF–1.4M

Select item 781767910.

High-fidelity DNA ligation enforces accurate Okazaki fragment maturation during DNA replication

Jessica S. Williams, Percy P. Tumbale, Mercedes E. Arana, Julian A. Rana, R. Scott Williams, Thomas A. Kunkel

Nat Commun. 2021; 12: 482. Published online 2021 Jan 20. doi: 10.1038/s41467-020-20800-1

PMCID:: PMC7817679

Abstract Article PDF–2.7M

Select item 771875111.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 750254512.

Genetic characterization of three distinct mechanisms supporting RNA-driven DNA repair and modification reveals major role of DNA polymerase ζ

Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L. Gombolay, Kuntal Mukherjee, Efiyenia I. Kaparos, Gary Newnam, Alexander Mazin, Francesca Storici

Mol Cell. Author manuscript; available in PMC 2021 Sep 17.

Published in final edited form as: Mol Cell. 2020 Sep 17; 79(6): 1037–1050.e5. Published online 2020 Sep 2. doi: 10.1016/j.molcel.2020.08.011

PMCID:: PMC7502545

Abstract Article PDF–1.9M

Select item 731871613.

NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets

Lijuan Zhu, Ju Zhang, Yi Zhang, Jidong Lang, Ju Xiang, Xiaogang Bai, Na Yan, Geng Tian, Huajun Zhang, Jialiang Yang

Front Bioeng Biotechnol. 2020; 8: 547. Published online 2020 Jun 19. doi: 10.3389/fbioe.2020.00547

PMCID:: PMC7318716

Abstract Article PDF–2.4M

Select item 726369614.

A Genome-Wide Screen for Genes Affecting Spontaneous Direct-Repeat Recombination in Saccharomyces cerevisiae

Daniele Novarina, Ridhdhi Desai, Jessica A. Vaisica, Jiongwen Ou, Mohammed Bellaoui, Grant W. Brown, Michael Chang

G3 (Bethesda) 2020 Jun; 10(6): 1853–1867. Published online 2020 Apr 3. doi: 10.1534/g3.120.401137

Correction in:: G3 (Bethesda). 2022 Sep; 12(9): jkac181.

PMCID:: PMC7263696

Abstract Article PDF–2.2M

Select item 719360915.

DNA replication machinery prevents Rad52-dependent single-strand annealing that leads to gross chromosomal rearrangements at centromeres

Atsushi T. Onaka, Jie Su, Yasuhiro Katahira, Crystal Tang, Faria Zafar, Keita Aoki, Wataru Kagawa, Hironori Niki, Hiroshi Iwasaki, Takuro Nakagawa

Commun Biol. 2020; 3: 202. Published online 2020 Apr 30. doi: 10.1038/s42003-020-0934-0

PMCID:: PMC7193609

Abstract Article PDF–2.4M

Select item 714568316.

Inactivation of folylpolyglutamate synthetase Met7 results in genome instability driven by an increased dUTP/dTTP ratio

Tobias T Schmidt, Sushma Sharma, Gloria X Reyes, Anna Kolodziejczak, Tina Wagner, Brian Luke, Anders Hofer, Andrei Chabes, Hans Hombauer

Nucleic Acids Res. 2020 Jan 10; 48(1): 264–277. Published online 2019 Oct 24. doi: 10.1093/nar/gkz1006

PMCID:: PMC7145683

Abstract Article PDF–3.9M

Select item 708593217.

Transfer of the Septin Ring to Cytokinetic Remnants in ER stress Directs Age-Sensitive Cell Cycle Re-entry

Jesse T. Chao, Francisco Piña, Masayuki Onishi, Yifat Cohen, Ya-Shiuan Lai, Maya Schuldiner, Maho Niwa

Dev Cell. Author manuscript; available in PMC 2020 Oct 21.

Published in final edited form as: Dev Cell. 2019 Oct 21; 51(2): 173–191.e5. Published online 2019 Sep 26. doi: 10.1016/j.devcel.2019.08.017

PMCID:: PMC7085932

Abstract Article PDF–2.5M

Select item 683773918.

Identification of Exo1-Msh2-interaction motifs in DNA mismatch repair and new Msh2-binding partners

Eva M. Goellner, Christopher D. Putnam, William J. Graham V, Christine M. Rahal, Bin-Zhong Li, Richard D. Kolodner

Nat Struct Mol Biol. Author manuscript; available in PMC 2019 Nov 7.

Published in final edited form as: Nat Struct Mol Biol. 2018 Aug; 25(8): 650–659. Published online 2018 Jul 30. doi: 10.1038/s41594-018-0092-y

Correction in:: Nat Struct Mol Biol. 2019 Nov 4

PMCID:: PMC6837739

Abstract Article PDF–2.3M

Select item 671577419.

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis

Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos

Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022