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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102350863.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 98945554.

Yeast derlin Dfm1 employs a chaperone-like function to resolve misfolded membrane protein stress

Rachel Kandel, Jasmine Jung, Della Syau, Tiffany Kuo, Livia Songster, Casey Horn, Claire Chapman, Analine Aguayo, Sascha Duttke, Christopher Benner, Sonya E. Neal

PLoS Biol. 2023 Jan; 21(1): e3001950. Published online 2023 Jan 23. doi: 10.1371/journal.pbio.3001950

PMCID:: PMC9894555

Abstract Article PDF–3.3M

Select item 96309865.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89193377.

Selective microautophagy of proteasomes is initiated by ESCRT-0 and is promoted by proteasome ubiquitylation

Jianhui Li, Mark Hochstrasser

J Cell Sci. 2022 Feb 15; 135(4): jcs259393. Published online 2022 Feb 21. doi: 10.1242/jcs.259393

PMCID:: PMC8919337

Abstract Article

Select item 87922278.

Bro1 binds the Vps20 subunit of ESCRT-III and promotes ESCRT-III regulation by Doa4

Dalton Buysse, Matt West, Mitchell Leih, Greg Odorizzi

Traffic. Author manuscript; available in PMC 2023 Feb 1.

Published in final edited form as: Traffic. 2022 Feb; 23(2): 109–119. Published online 2022 Jan 13. doi: 10.1111/tra.12828

PMCID:: PMC8792227

Abstract Article PDF–1.8M

Select item 85105239.

Vtc5 Is Localized to the Vacuole Membrane by the Conserved AP-3 Complex to Regulate Polyphosphate Synthesis in Budding Yeast

Amanda Bentley-DeSousa, Michael Downey

mBio. 2021 Sep-Oct; 12(5): e00994-21. Published online 2021 Sep 21. doi: 10.1128/mBio.00994-21

Correction in:: mBio. 2021 Nov-Dec; 12(6): e02997-21.

PMCID:: PMC8510523

Abstract Article PDF–2.5M

Select item 835352110.

Vacuolar H⁺-ATPase dysfunction rescues intralumenal vesicle cargo sorting in yeast lacking PI(3,5)P₂ or Doa4

Zachary N. Wilson, Dalton Buysse, Matt West, Daniel Ahrens, Greg Odorizzi

J Cell Sci. 2021 Aug 1; 134(15): jcs258459. Published online 2021 Aug 3. doi: 10.1242/jcs.258459

PMCID:: PMC8353521

Abstract Article

Select item 828266411.

Ist2 recruits the lipid transporters Osh6/7 to ER–PM contacts to maintain phospholipid metabolism

Andrew King On Wong, Barry Paul Young, Christopher J.R. Loewen

J Cell Biol. 2021 Sep 6; 220(9): e201910161. Published online 2021 Jul 14. doi: 10.1083/jcb.201910161

PMCID:: PMC8282664

Abstract Article PDF–7.6M

Select item 753061012.

Gene Loss Predictably Drives Evolutionary Adaptation

Jana Helsen, Karin Voordeckers, Laura Vanderwaeren, Toon Santermans, Maria Tsontaki, Kevin J Verstrepen, Rob Jelier

Mol Biol Evol. 2020 Oct; 37(10): 2989–3002. Published online 2020 Jul 13. doi: 10.1093/molbev/msaa172

PMCID:: PMC7530610

Abstract Article PDF–1.8M

Select item 726369213.

Genetic Selection Based on a Ste6^*C-HA-Ura3 Substrate Identifies New Cytosolic Quality Control Alleles in Saccharomyces cerevisiae

Shu Ning Chan, Rupali Prasad, Paul Matsudaira

G3 (Bethesda) 2020 Jun; 10(6): 1879–1891. Published online 2020 Apr 16. doi: 10.1534/g3.120.401186

PMCID:: PMC7263692

Abstract Article PDF–2.5M

Select item 721978114.

The degradation-promoting roles of deubiquitinases Ubp6 and Ubp3 in cytosolic and ER protein quality control

Hongyi Wu, Davis T. W. Ng, Ian Cheong, Paul Matsudaira

PLoS One. 2020; 15(5): e0232755. Published online 2020 May 13. doi: 10.1371/journal.pone.0232755

PMCID:: PMC7219781

Abstract Article PDF–2.0M

Select item 719787115.

The ubiquitin hydrolase Doa4 directly binds Snf7 to inhibit recruitment of ESCRT-III remodeling factors in S. cerevisiae

Dalton Buysse, Anna-Katharina Pfitzner, Matt West, Aurélien Roux, Greg Odorizzi

J Cell Sci. 2020 Apr 15; 133(8): jcs241455. Published online 2020 Apr 28. doi: 10.1242/jcs.241455

PMCID:: PMC7197871

Abstract Article

Select item 640055016.

The anaphase-promoting complex regulates the degradation of the inner nuclear membrane protein Mps3

Bailey A. Koch, Hui Jin, Robert J. Tomko, Jr., Hong-Guo Yu

J Cell Biol. 2019 Mar 4; 218(3): 839–854. doi: 10.1083/jcb.201808024

PMCID:: PMC6400550

Abstract Article PDF–3.7M

Select item 629136617.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j