PMC Links for GEO Profiles (Select 23366664) - PMC

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 77187516.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 75025457.

Genetic characterization of three distinct mechanisms supporting RNA-driven DNA repair and modification reveals major role of DNA polymerase ζ

Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L. Gombolay, Kuntal Mukherjee, Efiyenia I. Kaparos, Gary Newnam, Alexander Mazin, Francesca Storici

Mol Cell. Author manuscript; available in PMC 2021 Sep 17.

Published in final edited form as: Mol Cell. 2020 Sep 17; 79(6): 1037–1050.e5. Published online 2020 Sep 2. doi: 10.1016/j.molcel.2020.08.011

PMCID:: PMC7502545

Abstract Article PDF–1.9M

Select item 71407078.

Heme, A Metabolic Sensor, Directly Regulates the Activity of the KDM4 Histone Demethylase Family and Their Interactions with Partner Proteins

Purna Chaitanya Konduri, Tianyuan Wang, Narges Salamat, Li Zhang

Cells. 2020 Mar; 9(3): 773. Published online 2020 Mar 22. doi: 10.3390/cells9030773

PMCID:: PMC7140707

Abstract Article PDF–3.2M

Select item 64434159.

Cooperation Between Non-essential DNA Polymerases Contributes to Genome Stability in Saccharomyces cerevisiae

Damon Meyer, Becky Xu Hua Fu, Monique Chavez, Sophie Loeillet, Paula Cerqueira, Alain Nicolas, Wolf-Dietrich Heyer

DNA Repair (Amst) Author manuscript; available in PMC 2020 Apr 1.

Published in final edited form as: DNA Repair (Amst). 2019 Apr; 76: 40–49. Published online 2019 Feb 6. doi: 10.1016/j.dnarep.2019.02.004

PMCID:: PMC6443415

Abstract Article PDF–1.5M

Select item 634674510.

Dna2 nuclease deficiency results in large and complex DNA insertions at chromosomal breaks

Yang Yu, Nhung Pham, Bo Xia, Alma Papusha, Guangyu Wang, Zhenxin Yan, Guang Peng, Kaifu Chen, Grzegorz Ira

Nature. Author manuscript; available in PMC 2019 Jun 5.

Published in final edited form as: Nature. 2018 Dec; 564(7735): 287–290. Published online 2018 Dec 5. doi: 10.1038/s41586-018-0769-8

PMCID:: PMC6346745

Abstract Article PDF–1.6M

Select item 593719011.

Ku DNA End-Binding Activity Promotes Repair Fidelity and Influences End-Processing During Nonhomologous End-Joining in Saccharomyces cerevisiae

Charlene H. Emerson, Christopher R. Lopez, Albert Ribes-Zamora, Erica J. Polleys, Christopher L. Williams, Lythou Yeo, Jacques E. Zaneveld, Rui Chen, Alison A. Bertuch

Genetics. 2018 May; 209(1): 115–128. Published online 2018 Mar 2. doi: 10.1534/genetics.117.300672

PMCID:: PMC5937190

Abstract Article PDF–2.0M

Select item 566188512.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025413.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 520924514.

A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker

Mol Cell. Author manuscript; available in PMC 2017 Aug 4.

Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022

PMCID:: PMC5209245

Abstract Article PDF–1.6M

Select item 503898115.

Role of the yeast DNA repair protein Nej1 in end processing during the repair of DNA double strand breaks by non-homologous end joining

Hui Yang, Yoshihiro Matsumoto, Kelly M. Trujillo, Susan P. Lees-Miller, Mary Ann Osley, Alan E. Tomkinson

DNA Repair (Amst) Author manuscript; available in PMC 2016 Sep 27.

Published in final edited form as: DNA Repair (Amst). 2015 Jul; 31: 1–10. Published online 2015 Apr 21. doi: 10.1016/j.dnarep.2015.04.003

PMCID:: PMC5038981

Abstract Article PDF–909K

Select item 485698216.

Polymerases ε and ∂ repair dysfunctional telomeres facilitated by salt

Iglika G. Ivanova, Laura Maringele

Nucleic Acids Res. 2016 May 5; 44(8): 3728–3738. Published online 2016 Feb 15. doi: 10.1093/nar/gkw071

PMCID:: PMC4856982

Abstract Article PDF–3.0M

Select item 482410217.

Overhang polarity of chromosomal double-strand breaks impacts kinetics and fidelity of yeast non-homologous end joining

Zhuobin Liang, Sham Sunder, Sivakumar Nallasivam, Thomas E. Wilson

Nucleic Acids Res. 2016 Apr 7; 44(6): 2769–2781. Published online 2016 Jan 14. doi: 10.1093/nar/gkw013

PMCID:: PMC4824102

Abstract Article PDF–3.3M

Select item 475793618.

Requirement of POL3 and POL4 on non-homologous and microhomology-mediated end joining in rad50/xrs2 mutants of Saccharomyces cerevisiae

Alvaro Galli, Cecilia Y. Chan, Liubov Parfenova, Tiziana Cervelli, Robert H. Schiestl

Mutagenesis. 2015 Nov; 30(6): 841–849. Published online 2015 Jun 29. doi: 10.1093/mutage/gev046

PMCID:: PMC4757936

Abstract Article PDF–1.1M

Select item 474391919.

The Replisome-Coupled E3 Ubiquitin Ligase Rtt101^Mms22 Counteracts Mrc1 Function to Tolerate Genotoxic Stress

Raymond Buser, Vanessa Kellner, Andre Melnik, Caroline Wilson-Zbinden, René Schellhaas, Lisa Kastner, Wojciech Piwko, Martina Dees, Paola Picotti, Marija Maric, Karim Labib, Brian Luke, Matthias Peter

PLoS Genet. 2016 Feb; 12(2): e1005843. Published online 2016 Feb 5. doi: 10.1371/journal.pgen.1005843

PMCID:: PMC4743919

Abstract Article PDF–9.8M

Select item 468755220.

DNA polymerases δ and λ cooperate in repairing double-strand breaks by microhomology-mediated end-joining in Saccharomyces cerevisiae

Damon Meyer, Becky Xu Hua Fu, Wolf-Dietrich Heyer

Proc Natl Acad Sci U S A. 2015 Dec 15; 112(50): E6907–E6916. Published online 2015 Nov 25. doi: 10.1073/pnas.1507833112

PMCID:: PMC4687552

Abstract Article PDF–1.0M

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