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Items: 1 to 20 of 35

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Phylogenetic Comparison and Splicing Analysis of the U1 snRNP-specific Protein U1C in Eukaryotes
Kai-Lu Zhang, Jian-Li Zhou, Jing-Fang Yang, Yu-Zhen Zhao, Debatosh Das, Ge-Fei Hao, Caie Wu, Jianhua Zhang, Fu-Yuan Zhu, Mo-Xian Chen, Shao-Ming Zhou
Front Mol Biosci. 2021; 8: 696319. Published online 2021 Sep 9. doi: 10.3389/fmolb.2021.696319
PMCID:
PMC8458698
AbstractArticlePDF–4.4M
5.
Structural insights into how Prp5 proofreads the pre-mRNA branch site
Zhenwei Zhang, Norbert Rigo, Olexandr Dybkov, Jean-Baptiste Fourmann, Cindy L. Will, Vinay Kumar, Henning Urlaub, Holger Stark, Reinhard Lührmann
Nature. 2021; 596(7871): 296–300. Published online 2021 Aug 4. doi: 10.1038/s41586-021-03789-5
PMCID:
PMC8357632
AbstractArticlePDF–16M
6.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
7.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.9M
8.
Structure of the yeast spliceosomal post-catalytic P complex
Shiheng Liu, Xueni Li, Lingdi Zhang, Jiansen Jiang, Ryan C. Hill, Yanxiang Cui, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Science. Author manuscript; available in PMC 2018 Feb 27.
Published in final edited form as: Science. 2017 Dec 8; 358(6368): 1278–1283. Published online 2017 Nov 16. doi: 10.1126/science.aar3462
PMCID:
PMC5828012
AbstractArticlePDF–976K
9.
CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing
Xueni Li, Shiheng Liu, Jiansen Jiang, Lingdi Zhang, Sara Espinosa, Ryan C. Hill, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Nat Commun. 2017; 8: 1035. Published online 2017 Oct 19. doi: 10.1038/s41467-017-01241-9
Correction in:
Nat Commun. 2018; 9: 1495.
PMCID:
PMC5648754
AbstractArticlePDF–5.7M
10.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
11.
Structure of a spliceosome remodelled for exon ligation
Sebastian M. Fica, Chris Oubridge, Wojciech P. Galej, Max E. Wilkinson, Xiao-Chen Bai, Andrew J. Newman, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2017 Jul 11.
Published in final edited form as: Nature. 2017 Feb 16; 542(7641): 377–380. Published online 2017 Jan 11. doi: 10.1038/nature21078
PMCID:
PMC5321579
AbstractArticlePDF–5.6M
12.
Will the circle be unbroken: specific mutations in the yeast Sm protein ring expose a requirement for assembly factor Brr1, a homolog of Gemin2
Beate Schwer, Allen J. Roth, Stewart Shuman
RNA. 2017 Mar; 23(3): 420–430. doi: 10.1261/rna.059881.116
PMCID:
PMC5311505
AbstractArticlePDF–1.7M
13.
Structure–function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring
Beate Schwer, Joshua Kruchten, Stewart Shuman
RNA. 2016 Sep; 22(9): 1320–1328. doi: 10.1261/rna.057448.116
PMCID:
PMC4986888
AbstractArticlePDF–1.2M
14.
CryoEM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Å resolution
Thi Hoang Duong Nguyen, Wojciech P. Galej, Xiao-chen Bai, Chris Oubridge, Andrew J. Newman, Sjors H. W. Scheres, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2016 Aug 18.
Published in final edited form as: Nature. 2016 Feb 18; 530(7590): 298–302. Published online 2016 Feb 1. doi: 10.1038/nature16940
PMCID:
PMC4762201
AbstractArticlePDF–6.1M
15.
Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly
Allison L. Didychuk, Eric J. Montemayor, David A. Brow, Samuel E. Butcher
Nucleic Acids Res. 2016 Feb 18; 44(3): 1398–1410. Published online 2015 Dec 15. doi: 10.1093/nar/gkv1374
PMCID:
PMC4756825
AbstractArticlePDF–9.3M
16.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
17.
Proteomics of yeast telomerase identified Cdc48-Npl4-Ufd1 and Ufd4 as regulators of Est1 and telomere length
Kah-Wai Lin, Karin R. McDonald, Amanda J. Guise, Angela Chan, Ileana M. Cristea, Virginia A. Zakian
Nat Commun. 2015; 6: 8290. Published online 2015 Sep 14. doi: 10.1038/ncomms9290
PMCID:
PMC4579843
AbstractArticlePDF–1.6M
18.
The architecture of the spliceosomal U4/U6.U5 tri-snRNP
Thi Hoang Duong Nguyen, Wojciech P. Galej, Xiao-chen Bai, Christos G. Savva, Andrew J. Newman, Sjors H. W. Scheres, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2016 Jan 2.
Published in final edited form as: Nature. 2015 Jul 2; 523(7558): 47–52. Published online 2015 Jun 24. doi: 10.1038/nature14548
PMCID:
PMC4536768
AbstractArticlePDF–6.7M
19.
Brr2 plays a role in spliceosomal activation in addition to U4/U6 unwinding
Lingdi Zhang, Xueni Li, Ryan C. Hill, Yan Qiu, Wenzheng Zhang, Kirk C. Hansen, Rui Zhao
Nucleic Acids Res. 2015 Mar 31; 43(6): 3286–3297. Published online 2015 Feb 10. doi: 10.1093/nar/gkv062
PMCID:
PMC4381053
AbstractArticlePDF–5.3M
20.
Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing
Shravan Kumar Mishra, Tim Ammon, Grzegorz M. Popowicz, Marcin Krajewski, Roland J. Nagel, Manuel Ares, Jr, Tad A. Holak, Stefan Jentsch
Nature. Author manuscript; available in PMC 2013 Mar 4.
Published in final edited form as: Nature. 2011 May 25; 474(7350): 173–178. Published online 2011 May 25. doi: 10.1038/nature10143
PMCID:
PMC3587138
AbstractArticlePDF–1.5M

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