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Select item 111094831.

K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors

Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer

Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740

PMCID:: PMC11109483

Abstract Article PDF–2.9M

Select item 110241852.

The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis

Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger

Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7

PMCID:: PMC11024185

Abstract Article PDF–7.4M

Select item 109275843.

Proteasome condensate formation is driven by multivalent interactions with shuttle factors and ubiquitin chains

Kenrick A. Waite, Gabrielle Vontz, Stella Y. Lee, Jeroen Roelofs

Proc Natl Acad Sci U S A. 2024 Mar 5; 121(10): e2310756121. Published online 2024 Feb 26. doi: 10.1073/pnas.2310756121

PMCID:: PMC10927584

Abstract Article PDF–5.7M

Select item 108724774.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001385.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166426.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 98363487.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 98166448.

Suppression of chromosome instability by targeting a DNA helicase in budding yeast

Molly R. Gordon, Jin Zhu, Gordon Sun, Rong Li

Mol Biol Cell. 2023 Jan 1; 34(1): ar3. Published online 2022 Dec 15. doi: 10.1091/mbc.E22-09-0395

PMCID:: PMC9816644

Abstract Article PDF–3.9M

Select item 96733529.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 963098610.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 920981111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 884321112.

Exceptional origin activation revealed by comparative analysis in two laboratory yeast strains

Ishita Joshi, Jie Peng, Gina Alvino, Elizabeth Kwan, Wenyi Feng

PLoS One. 2022; 17(2): e0263569. Published online 2022 Feb 14. doi: 10.1371/journal.pone.0263569

PMCID:: PMC8843211

Abstract Article PDF–3.3M

Select item 851195013.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 849296114.

Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier

Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor

Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755

PMCID:: PMC8492961

Abstract Article

Select item 840599215.

A novel recognition site for polyubiquitin and ubiquitin-like signals in an unexpected region of proteasomal subunit Rpn1

Andrew J. Boughton, Leonard Liu, Tali Lavy, Oded Kleifeld, David Fushman

J Biol Chem. 2021 Sep; 297(3): 101052. Published online 2021 Aug 6. doi: 10.1016/j.jbc.2021.101052

PMCID:: PMC8405992

Abstract Article PDF–3.6M

Select item 818485016.

Cryo-EM structure of TFIIH/Rad4–Rad23–Rad33 in damaged DNA opening in nucleotide excision repair

Trevor van Eeuwen, Yoonjung Shim, Hee Jong Kim, Tingting Zhao, Shrabani Basu, Benjamin A. Garcia, Craig D. Kaplan, Jung-Hyun Min, Kenji Murakami

Nat Commun. 2021; 12: 3338. Published online 2021 Jun 7. doi: 10.1038/s41467-021-23684-x

PMCID:: PMC8184850

Abstract Article PDF–6.1M

Select item 800817517.

Polyubiquitin and ubiquitin-like signals share common recognition sites on proteasomal subunit Rpn1

Andrew J. Boughton, Daoning Zhang, Rajesh K. Singh, David Fushman

J Biol Chem. 2021 Jan-Jun; 296: 100450. Published online 2021 Feb 20. doi: 10.1016/j.jbc.2021.100450

PMCID:: PMC8008175

Abstract Article PDF–2.4M

Select item 798050418.

The STI1‐domain is a flexible alpha‐helical fold with a hydrophobic groove

Michelle Y. Fry, Shyam M. Saladi, William M. Clemons, Jr

Protein Sci. 2021 Apr; 30(4): 882–898. Published online 2021 Mar 4. doi: 10.1002/pro.4049

PMCID:: PMC7980504

Abstract Article PDF–4.2M

Select item 770803919.

Tethering-facilitated DNA ‘opening’ and complementary roles of β-hairpin motifs in the Rad4/XPC DNA damage sensor protein

Debamita Paul, Hong Mu, Amirrasoul Tavakoli, Qing Dai, Xuejing Chen, Sagnik Chakraborty, Chuan He, Anjum Ansari, Suse Broyde, Jung-Hyun Min

Nucleic Acids Res. 2020 Dec 2; 48(21): 12348–12364. Published online 2020 Oct 29. doi: 10.1093/nar/gkaa909

PMCID:: PMC7708039

Abstract Article PDF–4.4M

Select item 766412220.

The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation

Teresa M. Buck, Xuemei Zeng, Pamela S. Cantrell, Richard T. Cattley, Zikri Hasanbasri, Megan E. Yates, Diep Nguyen, Nathan A. Yates, Jeffrey L. Brodsky

Mol Cell Proteomics. 2020 Nov; 19(11): 1896–1909. Published online 2020 Aug 31. doi: 10.1074/mcp.RA120.002050