PMC Links for GEO Profiles (Select 234319) - PMC

Select item 114236781.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 111094832.

K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors

Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer

Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740

PMCID:: PMC11109483

Abstract Article PDF–2.9M

Select item 108724773.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 96380285.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 62913667.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 48871018.

Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors

Mark R. Woodford, Andrew W. Truman, Diana M. Dunn, Sandra M. Jensen, Richard Cotran, Renee Bullard, Mourad Abouelleil, Kristin Beebe, Donald Wolfgeher, Sara Wierzbicki, Dawn E. Post, Tiffany Caza, Shinji Tsutsumi, Barry Panaretou, Stephen J. Kron, Jane B. Trepel, Steve Landas, Chrisostomos Prodromou, Oleg Shapiro, William G. Stetler-Stevenson, Dimitra Bourboulia, Len Neckers, Gennady Bratslavsky, Mehdi Mollapour

Cell Rep. Author manuscript; available in PMC 2016 May 31.

Published in final edited form as: Cell Rep. 2016 Feb 2; 14(4): 872–884. Published online 2016 Jan 21. doi: 10.1016/j.celrep.2015.12.084

PMCID:: PMC4887101

Abstract Article PDF–2.2M

Select item 44859909.

Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveals chaperone-dependent regulation of ribonucleotide reductase

Andrew W. Truman, Kolbrun Kristjansdottir, Donald Wolfgeher, Natalia Ricco, Anoop Mayampurath, Samuel L. Volchenboum, Josep Clotet, Stephen J. Kron

J Proteomics. Author manuscript; available in PMC 2015 Jun 30.

Published in final edited form as: J Proteomics. 2015 Jan 1; 112: 285–300. Published online 2014 Oct 18. doi: 10.1016/j.jprot.2014.09.028

PMCID:: PMC4485990

Abstract Article PDF–2.0M

Select item 445986910.

The quantitative changes in the yeast Hsp70 and Hsp90 interactomes upon DNA damage

Andrew W. Truman, Kolbrun Kristjansdottir, Donald Wolfgeher, Natalia Ricco, Anoop Mayampurath, Samuel L. Volchenboum, Josep Clotet, Stephen J. Kron

Data Brief. 2015 Mar; 2: 12–15. Published online 2014 Nov 7. doi: 10.1016/j.dib.2014.10.006

PMCID:: PMC4459869

Abstract Article PDF–178K

Select item 394522111.

Co-translational Localization of an LTR-Retrotransposon RNA to the Endoplasmic Reticulum Nucleates Virus-Like Particle Assembly Sites

Jung H. Doh, Sheila Lutz, M. Joan Curcio

PLoS Genet. 2014 Mar; 10(3): e1004219. Published online 2014 Mar 6. doi: 10.1371/journal.pgen.1004219

PMCID:: PMC3945221

Abstract Article PDF–11M

Select item 354808212.

Ty1 Gag enhances the stability and nuclear export of Ty1 mRNA

Mary Ann Checkley, Jessica A. Mitchell, Linda D. Eizenstat, Stephen J. Lockett, David J. Garfinkel

Traffic. Author manuscript; available in PMC 2014 Jan 1.

Published in final edited form as: Traffic. 2013 Jan; 14(1): 57–69. Published online 2012 Oct 17. doi: 10.1111/tra.12013

PMCID:: PMC3548082

Abstract Article PDF–2.4M

Select item 351142913.

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

Martin Carr, Douda Bensasson, Casey M. Bergman

PLoS One. 2012; 7(11): e50978. Published online 2012 Nov 30. doi: 10.1371/journal.pone.0050978

PMCID:: PMC3511429

Abstract Article PDF–917K

Select item 332256714.

Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses

Joshua M. Gilmore, Mihaela E. Sardiu, Swaminathan Venkatesh, Brent Stutzman, Allison Peak, Chris W. Seidel, Jerry L. Workman, Laurence Florens, Michael P. Washburn

Mol Cell Proteomics. 2012 Apr; 11(4): M111.011544. Published online 2011 Dec 22. doi: 10.1074/mcp.M111.011544

PMCID:: PMC3322567

Abstract Article PDF–2.3M

Select item 257886015.

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

Yuko Hasegawa, Kenji Irie, André P. Gerber

RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508

PMCID:: PMC2578860

Abstract Article PDF–1.3M

Select item 10882416.

Invading the Yeast Nucleus: a Nuclear Localization Signal at the C Terminus of Ty1 Integrase Is Required for Transposition In Vivo

Margaret A. Kenna, Carrie Baker Brachmann, Scott E. Devine, Jef D. Boeke

Mol Cell Biol. 1998 Feb; 18(2): 1115–1124. doi: 10.1128/mcb.18.2.1115

PMCID:: PMC108824

Abstract Article PDF–1.4M

Select item 3187517.

A comprehensive two-hybrid analysis to explore the yeast protein interactome

Takashi Ito, Tomoko Chiba, Ritsuko Ozawa, Mikio Yoshida, Masahira Hattori, Yoshiyuki Sakaki

Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4569–4574. Published online 2001 Mar 13. doi: 10.1073/pnas.061034498

PMCID:: PMC31875

Abstract Article PDF–110K

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