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Items: 1 to 20 of 36

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
3.
Isc10, an inhibitor of the Smk1 MAPK, prevents activation loop autophosphorylation and substrate phosphorylation through separate mechanisms
Abhimannyu Rimal, Thomas M. Swayne, Zeal P. Kamdar, Madison A. Tewey, Edward Winter
J Biol Chem. 2022 Oct; 298(10): 102450. Published online 2022 Sep 3. doi: 10.1016/j.jbc.2022.102450
PMCID:
PMC9558048
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The Smk1 MAPK and Its Activator, Ssp2, Are Required for Late Prospore Membrane Development in Sporulating Saccharomyces cerevisiae
Matthew Durant, Joseph M. Roesner, Xheni Mucelli, Christian J. Slubowski, Erin Klee, Brian C. Seitz, Zoey Wallis, Linda S. Huang
J Fungi (Basel) 2021 Jan; 7(1): 53. Published online 2021 Jan 14. doi: 10.3390/jof7010053
PMCID:
PMC7828665
AbstractArticlePDF–4.7M
6.
Isc10, an Inhibitor That Links the Anaphase-Promoting Complex to a Meiosis-Specific Mitogen-Activated Protein Kinase
Abhimannyu Rimal, Zeal P. Kamdar, Chong Wai Tio, Edward Winter
Mol Cell Biol. 2020 Aug; 40(16): e00097-20. Prepublished online 2020 May 18. Published online 2020 Jul 29. doi: 10.1128/MCB.00097-20
PMCID:
PMC7394827
AbstractArticlePDF–1.5M
7.
RNA Recognition-like Motifs Activate a Mitogen-Activated Protein Kinase
Timothy Phillips, Chong Wai Tio, Gregory Omerza, Abhimannyu Rimal, Ravi K. Lokareddy, Gino Cingolani, Edward Winter
Biochemistry. Author manuscript; available in PMC 2019 Apr 10.
Published in final edited form as: Biochemistry. 2018 Dec 18; 57(50): 6878–6887. Published online 2018 Dec 4. doi: 10.1021/acs.biochem.8b01032
PMCID:
PMC6457901
AbstractArticlePDF–719K
8.
The meiosis-specific Cdc20 family-member Ama1 promotes binding of the Ssp2 activator to the Smk1 MAP kinase
Gregory Omerza, Chong Wai Tio, Timothy Philips, Aviva Diamond, Aaron M. Neiman, Edward Winter
Mol Biol Cell. 2018 Jan 1; 29(1): 66–74. doi: 10.1091/mbc.E17-07-0473
PMCID:
PMC5746067
AbstractArticlePDF–1.0M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
12.
Ssp2 Binding Activates the Smk1 Mitogen-Activated Protein Kinase
Chong Wai Tio, Gregory Omerza, Timothy Phillips, Hua Jane Lou, Benjamin E. Turk, Edward Winter
Mol Cell Biol. 2017 May 15; 37(10): e00607-16. Prepublished online 2017 Feb 21. Published online 2017 May 2. doi: 10.1128/MCB.00607-16
PMCID:
PMC5477552
AbstractArticlePDF–1.9M
13.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
14.
An evolutionarily conserved pathway controls proteasome homeostasis
Adrien Rousseau, Anne Bertolotti
Nature. Author manuscript; available in PMC 2017 Feb 11.
Published in final edited form as: Nature. 2016 Aug 11; 536(7615): 184–189. doi: 10.1038/nature18943
PMCID:
PMC4990136
AbstractArticlePDF–5.1M
15.
Autophosphorylation of the Smk1 MAPK is spatially and temporally regulated by Ssp2 during meiotic development in yeast
Chong Wai Tio, Gregory Omerza, Sham Sunder, Edward Winter
Mol Biol Cell. 2015 Oct 1; 26(19): 3546–3555. doi: 10.1091/mbc.E15-05-0322
PMCID:
PMC4591697
AbstractArticlePDF–3.0M
16.
Developmental Coordination of Gamete Differentiation with Programmed Cell Death in Sporulating Yeast
Michael D. Eastwood, Marc D. Meneghini
Eukaryot Cell. 2015 Sep; 14(9): 858–867. Prepublished online 2015 Jun 19. Published online 2015 Aug 27. doi: 10.1128/EC.00068-15
PMCID:
PMC4551598
AbstractArticlePDF–1.8M
17.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
18.
Activation of the Smk1 Mitogen-Activated Protein Kinase by Developmentally Regulated Autophosphorylation
Elizabeth Whinston, Gregory Omerza, Amrita Singh, Chong Wai Tio, Edward Winter
Mol Cell Biol. 2013 Feb; 33(4): 688–700. doi: 10.1128/MCB.00973-12
PMCID:
PMC3571338
AbstractArticlePDF–2.0M
19.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
20.
Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes
Joseph Fasolo, Andrea Sboner, Mark G.F. Sun, Haiyuan Yu, Rui Chen, Donald Sharon, Philip M. Kim, Mark Gerstein, Michael Snyder
Genes Dev. 2011 Apr; 25(7): 767–778. doi: 10.1101/gad.1998811
PMCID:
PMC3070938
AbstractArticlePDF–1.2M

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