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Items: 1 to 20 of 108

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
PMCID:
PMC10551700
AbstractArticlePDF–3.7M
4.
Design and Characterization of Rapid Optogenetic Circuits for Dynamic Control in Yeast Metabolic Engineering
Evan M. Zhao, Makoto A. Lalwani, Robert J. Lovelett, Sergio A. García-Echauri, Shannon M. Hoffman, Christopher L. Gonzalez, Jared E. Toettcher, Ioannis G. Kevrekidis, José L. Avalos
ACS Synth Biol. Author manuscript; available in PMC 2023 Aug 3.
Published in final edited form as: ACS Synth Biol. 2020 Dec 18; 9(12): 3254–3266. Published online 2020 Nov 24. doi: 10.1021/acssynbio.0c00305
PMCID:
PMC10399620
AbstractArticlePDF–1.3M
5.
Functional characterization and comparative analysis of gene repression-mediating domains interacting with yeast pleiotropic corepressors Sin3, Cyc8 and Tup1
Julia Lettow, Felix Kliewe, Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2023; 69(2-3): 127–139. Published online 2023 Mar 1. doi: 10.1007/s00294-023-01262-6
PMCID:
PMC10163088
AbstractArticlePDF–1.2M
6.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
Transcriptional repressor Gal80 recruits corepressor complex Cyc8–Tup1 to structural genes of the Saccharomyces cerevisiae GAL regulon
Julia Lettow, Rasha Aref, Hans-Joachim Schüller
Curr Genet. 2022; 68(1): 115–124. Published online 2021 Oct 7. doi: 10.1007/s00294-021-01215-x
PMCID:
PMC8801411
AbstractArticlePDF–1.2M
9.
VID22 counteracts G-quadruplex-induced genome instability
Elena Galati, Maria C Bosio, Daniele Novarina, Matteo Chiara, Giulia M Bernini, Alessandro M Mozzarelli, Maria L García-Rubio, Belén Gómez-González, Andrés Aguilera, Thomas Carzaniga, Marco Todisco, Tommaso Bellini, Giulia M Nava, Gianmaria Frigè, Sarah Sertic, David S Horner, Anastasia Baryshnikova, Caterina Manzari, Anna M D’Erchia, Graziano Pesole, Grant W Brown, Marco Muzi-Falconi, Federico Lazzaro
Nucleic Acids Res. 2021 Dec 16; 49(22): 12785–12804. Published online 2021 Dec 6. doi: 10.1093/nar/gkab1156
PMCID:
PMC8682794
AbstractArticlePDF–8.0M
10.
Computational analysis of GAL pathway pinpoints mechanisms underlying natural variation
Jiayin Hong, Julius Palme, Bo Hua, Michael Springer
PLoS Comput Biol. 2021 Sep; 17(9): e1008691. Published online 2021 Sep 27. doi: 10.1371/journal.pcbi.1008691
PMCID:
PMC8496860
AbstractArticlePDF–11M
11.
Decoupling transcription factor expression and activity enables dimmer switch gene regulation
C. Ricci-Tam, I. Ben-Zion, J. Wang, J. Palme, A. Li, Y. Savir, M. Springer
Science. Author manuscript; available in PMC 2021 Jun 3.
Published in final edited form as: Science. 2021 Apr 16; 372(6539): 292–295. doi: 10.1126/science.aba7582
PMCID:
PMC8173539
AbstractArticlePDF–914K
12.
Epigenetic Mechanisms Contribute to Evolutionary Adaptation of Gene Network Activity under Environmental Selection
Xinyue Luo, Ruijie Song, David F. Moreno, Hong-Yeoul Ryu, Mark Hochstrasser, Murat Acar
Cell Rep. Author manuscript; available in PMC 2020 Nov 11.
Published in final edited form as: Cell Rep. 2020 Oct 27; 33(4): 108306. doi: 10.1016/j.celrep.2020.108306
PMCID:
PMC7656290
AbstractArticlePDF–2.0M
13.
A double role of the Gal80 N terminus in activation of transcription by Gal4p
Annekathrin Reinhardt-Tews, Rościsław Krutyhołowa, Christian Günzel, Constance Roehl, Sebastian Glatt, Karin D Breunig
Life Sci Alliance. 2020 Dec; 3(12): e202000665. Published online 2020 Oct 9. doi: 10.26508/lsa.202000665
PMCID:
PMC7556753
AbstractArticlePDF–2.5M
14.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
15.
Direct Production of Difructose Anhydride IV from Sucrose by Co-fermentation of Recombinant Yeasts
Hyunjun Ko, Jung-Hoon Bae, Bong Hyun Sung, Mi-Jin Kim, Soon-Ho Park, Jung-Hoon Sohn
Sci Rep. 2019; 9: 15980. Published online 2019 Nov 4. doi: 10.1038/s41598-019-52373-5
PMCID:
PMC6828762
AbstractArticlePDF–1.3M
16.
Selective defects in gene expression control genome instability in yeast splicing mutants
Annie S. Tam, Tianna S. Sihota, Karissa L. Milbury, Anni Zhang, Veena Mathew, Peter C. Stirling
Mol Biol Cell. 2019 Jan 15; 30(2): 191–200. doi: 10.1091/mbc.E18-07-0439
PMCID:
PMC6589566
AbstractArticlePDF–5.1M
17.
Multi-component gene network design as a survival strategy in diverse environments
Xinyue Luo, Ruijie Song, Murat Acar
BMC Syst Biol. 2018; 12: 85. Published online 2018 Sep 26. doi: 10.1186/s12918-018-0609-3
PMCID:
PMC6158886
AbstractArticlePDF–2.0M
18.
Genetic and epigenetic strategies potentiate Gal4 activation to enhance fitness in recently diverged yeast species
Varun Sood, Jason H. Brickner
Curr Biol. Author manuscript; available in PMC 2018 Dec 4.
Published in final edited form as: Curr Biol. 2017 Dec 4; 27(23): 3591–3602.e3. Published online 2017 Nov 16. doi: 10.1016/j.cub.2017.10.035
PMCID:
PMC5846685
AbstractArticlePDF–2.8M
19.
Assigning function to natural allelic variation via dynamic modeling of gene network induction
Magali Richard, Florent Chuffart, Hélène Duplus‐Bottin, Fanny Pouyet, Martin Spichty, Etienne Fulcrand, Marianne Entrevan, Audrey Barthelaix, Michael Springer, Daniel Jost, Gaël Yvert
Mol Syst Biol. 2018 Jan; 14(1): e7803. Published online 2018 Jan 15. doi: 10.15252/msb.20177803
PMCID:
PMC5787706
AbstractArticlePDF–943K
20.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M

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