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Select item 114465481.

The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay

Moran Kelbert, Antonio Jordán-Pla, Lola de Miguel-Jiménez, José García-Martínez, Michael Selitrennik, Adi Guterman, Noa Henig, Sander Granneman, José E Pérez-Ortín, Sebastián Chávez, Mordechai Choder

eLife. 2024; 12: RP90766. Published online 2024 Oct 2. doi: 10.7554/eLife.90766

PMCID:: PMC11446548

Article PDF–7.1M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Article PDF–20M

Select item 99639354.

Structural basis of V-ATPase V_O region assembly by Vma12p, 21p, and 22p

Hanlin Wang, Stephanie A. Bueler, John L. Rubinstein

Proc Natl Acad Sci U S A. 2023 Feb 7; 120(6): e2217181120. Published online 2023 Feb 1. doi: 10.1073/pnas.2217181120

PMCID:: PMC9963935

Article PDF–4.4M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Article PDF–818K

Select item 88049296.

Oxidative stress protein Oxr1 promotes V‐ATPase holoenzyme disassembly in catalytic activity‐independent manner

Md. Murad Khan, Seowon Lee, Sergio Couoh‐Cardel, Rebecca A Oot, Hyunmin Kim, Stephan Wilkens, Soung‐Hun Roh

EMBO J. 2022 Feb 1; 41(3): e109360. Published online 2021 Dec 17. doi: 10.15252/embj.2021109360

PMCID:: PMC8804929

Article PDF–5.5M

Select item 77187577.

Oxidative Stress Responses and Nutrient Starvation in MCHM Treated Saccharomyces cerevisiae

Michael C. Ayers, Zachary N. Sherman, Jennifer E. G. Gallagher

G3 (Bethesda) 2020 Dec; 10(12): 4665–4678. Published online 2020 Oct 27. doi: 10.1534/g3.120.401661

PMCID:: PMC7718757

Article PDF–2.0M

Select item 73323458.

Atomic model for the membrane-embedded V_O motor of a eukaryotic V-ATPase

Mohammad T. Mazhab-Jafari, Alexis Rohou, Carla Schmidt, Stephanie A. Bueler, Samir Benlekbir, Carol V. Robinson, John L. Rubinstein

Nature. Author manuscript; available in PMC 2020 Jul 2.

Published in final edited form as: Nature. 2016 Nov 3; 539(7627): 118–122. Published online 2016 Oct 24. doi: 10.1038/nature19828

PMCID:: PMC7332345

Article PDF–4.6M

Select item 66699229.

Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism

Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis

EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433

PMCID:: PMC6669922

Article PDF–2.8M

Select item 646209610.

Structural comparison of the vacuolar and Golgi V-ATPases from Saccharomyces cerevisiae

Thamiya Vasanthakumar, Stephanie A. Bueler, Di Wu, Victoria Beilsten-Edmands, Carol V. Robinson, John L. Rubinstein

Proc Natl Acad Sci U S A. 2019 Apr 9; 116(15): 7272–7277. Published online 2019 Mar 25. doi: 10.1073/pnas.1814818116

PMCID:: PMC6462096

Article PDF–1.3M

Select item 603619411.

MgATP hydrolysis destabilizes the interaction between subunit H and yeast V₁-ATPase, highlighting H's role in V-ATPase regulation by reversible disassembly

Stuti Sharma, Rebecca A. Oot, Stephan Wilkens

J Biol Chem. 2018 Jul 6; 293(27): 10718–10730. Published online 2018 May 12. doi: 10.1074/jbc.RA118.002951

PMCID:: PMC6036194

Article PDF–2.8M

Select item 593683012.

Histone deacetylase–mediated regulation of endolysosomal pH

Hari Prasad, Rajini Rao

J Biol Chem. 2018 May 4; 293(18): 6721–6735. Published online 2018 Mar 22. doi: 10.1074/jbc.RA118.002025

PMCID:: PMC5936830

Article PDF–3.1M

Select item 566188513.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Article PDF–2.6M

Select item 558638314.

Histone Acetylation, Not Stoichiometry, Regulates Linker Histone Binding in Saccharomyces cerevisiae

Mackenzie B. D. Lawrence, Nicolas Coutin, Jennifer K. Choi, Benjamin J. E. Martin, Nicholas A. T. Irwin, Barry Young, Christopher Loewen, LeAnn J. Howe

Genetics. 2017 Sep; 207(1): 347–355. Published online 2017 Jul 26. doi: 10.1534/genetics.117.1132

PMCID:: PMC5586383

Article PDF–1.4M

Select item 548454415.

The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability

Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx

PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835

PMCID:: PMC5484544

Article PDF–14M

Select item 546950316.

Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein

Jianhua Zhao, Ksenia Beyrakhova, Yao Liu, Claudia P. Alvarez, Stephanie A. Bueler, Li Xu, Caishuang Xu, Michal T. Boniecki, Voula Kanelis, Zhao-Qing Luo, Miroslaw Cygler, John L. Rubinstein

PLoS Pathog. 2017 Jun; 13(6): e1006394. Published online 2017 Jun 1. doi: 10.1371/journal.ppat.1006394

PMCID:: PMC5469503

Article PDF–7.6M

Select item 520434817.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Article PDF–1.3M

Select item 496957518.

Crystal structure of yeast V₁‐ATPase in the autoinhibited state

Rebecca A Oot, Patricia M Kane, Edward A Berry, Stephan Wilkens

EMBO J. 2016 Aug 1; 35(15): 1694–1706. Published online 2016 Jun 13. doi: 10.15252/embj.201593447

PMCID:: PMC4969575

Article PDF–3.2M

Select item 486983519.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Article PDF–2.7M

Select item 481276920.

Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance

Daniel G. Schep, Jianhua Zhao, John L. Rubinstein

Proc Natl Acad Sci U S A. 2016 Mar 22; 113(12): 3245–3250. Published online 2016 Mar 7. doi: 10.1073/pnas.1521990113

PMCID:: PMC4812769

Article PDF–1.4M

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