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Items: 19

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
3.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
4.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
5.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
6.
Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network
Tingting Qin, Nabil Matmati, Lam C. Tsoi, Bidyut K. Mohanty, Nan Gao, Jijun Tang, Andrew B. Lawson, Yusuf A. Hannun, W. Jim Zheng
Nucleic Acids Res. 2014 Oct 13; 42(18): e138. Published online 2014 Jul 25. doi: 10.1093/nar/gku678
PMCID:
PMC4191379
AbstractArticlePDF–2.2M
7.
Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation
Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez
PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086
PMCID:
PMC3764036
AbstractArticlePDF–496K
8.
Biochemical Characterization of Hpa2 and Hpa3, Two Small Closely Related Acetyltransferases from Saccharomyces cerevisiae
Vinaya Sampath, Bingsheng Liu, Stefan Tafrov, Madhusudhan Srinivasan, Robert Rieger, Emily I. Chen, Rolf Sternglanz
J Biol Chem. 2013 Jul 26; 288(30): 21506–21513. Published online 2013 Jun 17. doi: 10.1074/jbc.M113.486274
PMCID:
PMC3724611
AbstractArticlePDF–1.5M
9.
Regulation of Septin Dynamics by the Saccharomyces cerevisiae Lysine Acetyltransferase NuA4
Leslie Mitchell, Andrea Lau, Jean-Philippe Lambert, Hu Zhou, Ying Fong, Jean-François Couture, Daniel Figeys, Kristin Baetz
PLoS One. 2011; 6(10): e25336. Published online 2011 Oct 3. doi: 10.1371/journal.pone.0025336
PMCID:
PMC3184947
AbstractArticlePDF–3.8M
10.
Antagonistic Gcn5-Hda1 interactions revealed by mutations to the Anaphase Promoting Complex in yeast
Azharul Islam, Emma L Turner, Johannes Menzel, Mackenzie E Malo, Troy AA Harkness
Cell Div. 2011; 6: 13. Published online 2011 Jun 8. doi: 10.1186/1747-1028-6-13
PMCID:
PMC3141613
AbstractArticlePDF–10M
11.
The Saccharomyces cerevisiae Anaphase-Promoting Complex Interacts with Multiple Histone-Modifying Enzymes To Regulate Cell Cycle Progression
Emma L. Turner, Mackenzie E. Malo, Marnie G. Pisclevich, Megan D. Dash, Gerald F. Davies, Terra G. Arnason, Troy A. A. Harkness
Eukaryot Cell. 2010 Oct; 9(10): 1418–1431. doi: 10.1128/EC.00097-10
PMCID:
PMC2950418
AbstractArticlePDF–3.2M
12.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
13.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M
14.
An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell
Yunchen Gong, Yoshito Kakihara, Nevan Krogan, Jack Greenblatt, Andrew Emili, Zhaolei Zhang, Walid A Houry
Mol Syst Biol. 2009; 5: 275. Published online 2009 Jun 16. doi: 10.1038/msb.2009.26
PMCID:
PMC2710862
AbstractArticlePDF–3.2M
15.
A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation
Yu-yi Lin, Yan Qi, Jin-ying Lu, Xuewen Pan, Daniel S. Yuan, Yingming Zhao, Joel S. Bader, Jef D. Boeke
Genes Dev. 2008 Aug 1; 22(15): 2062–2074. doi: 10.1101/gad.1679508
PMCID:
PMC2492751
AbstractArticlePDF–1.2M
16.
Association of yeast Upf1p with direct substrates of the NMD pathway
Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson
Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105
PMCID:
PMC2409234
AbstractArticlePDF–864K
17.
Genome-Wide Relationships between TAF1 and Histone Acetyltransferases in Saccharomyces cerevisiae
Melissa Durant, B. Franklin Pugh
Mol Cell Biol. 2006 Apr; 26(7): 2791–2802. doi: 10.1128/MCB.26.7.2791-2802.2006
PMCID:
PMC1430310
AbstractArticlePDF–463K
18.
Subcellular localization of the yeast proteome
Anuj Kumar, Seema Agarwal, John A. Heyman, Sandra Matson, Matthew Heidtman, Stacy Piccirillo, Lara Umansky, Amar Drawid, Ronald Jansen, Yang Liu, Kei-Hoi Cheung, Perry Miller, Mark Gerstein, G. Shirleen Roeder, Michael Snyder
Genes Dev. 2002 Mar 15; 16(6): 707–719. doi: 10.1101/gad.970902
PMCID:
PMC155358
AbstractArticlePDF–358K
19.
A comprehensive two-hybrid analysis to explore the yeast protein interactome
Takashi Ito, Tomoko Chiba, Ritsuko Ozawa, Mikio Yoshida, Masahira Hattori, Yoshiyuki Sakaki
Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4569–4574. Published online 2001 Mar 13. doi: 10.1073/pnas.061034498
PMCID:
PMC31875
AbstractArticlePDF–110K

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