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Items: 1 to 20 of 31

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Modification of Phosphorylation Sites in the Yeast Lysine Methyltransferase Set5 Exerts Influences on the Mitogen-Activated Protein Kinase Hog1 under Prolonged Acetic Acid Stress
Pei-Liang Ye, Bing Yuan, Xue-Qing Wang, Ming-Ming Zhang, Xin-Qing Zhao
Microbiol Spectr. 2023 Mar-Apr; 11(2): e03011-22. Published online 2023 Mar 28. doi: 10.1128/spectrum.03011-22
PMCID:
PMC10100857
AbstractArticlePDF–2.0M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit
Kerstin Schmitt, Alina-Andrea Kraft, Oliver Valerius
Int J Mol Sci. 2021 Nov; 22(21): 11653. Published online 2021 Oct 28. doi: 10.3390/ijms222111653
PMCID:
PMC8583833
AbstractArticlePDF–4.2M
7.
Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential
Ryan J. Separovich, Mandy W.M. Wong, Tyler R. Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins
J Biol Chem. 2021 Jan-Jun; 296: 100192. Published online 2020 Dec 20. doi: 10.1074/jbc.RA120.015995
PMCID:
PMC7948420
AbstractArticlePDF–3.8M
8.
Function of the MYND Domain and C-Terminal Region in Regulating the Subcellular Localization and Catalytic Activity of the SMYD Family Lysine Methyltransferase Set5
Deepika Jaiswal, Rashi Turniansky, James J. Moresco, Sabeen Ikram, Ganesh Ramaprasad, Assefa Akinwole, Julie Wolf, John R. Yates, III, Erin M. Green
Mol Cell Biol. 2020 Jan; 40(2): e00341-19. Prepublished online 2019 Nov 4. Published online 2020 Jan 3. doi: 10.1128/MCB.00341-19
PMCID:
PMC6944473
AbstractArticlePDF–2.2M
9.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
10.
Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs
Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen
PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319
PMCID:
PMC5922528
AbstractArticlePDF–7.1M
11.
Global study of holistic morphological effectors in the budding yeast Saccharomyces cerevisiae
Godai Suzuki, Yang Wang, Karen Kubo, Eri Hirata, Shinsuke Ohnuki, Yoshikazu Ohya
BMC Genomics. 2018; 19: 149. Published online 2018 Feb 20. doi: 10.1186/s12864-018-4526-z
PMCID:
PMC5819264
AbstractArticlePDF–1.9M
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
16.
The histone methyltransferases Set5 and Set1 have overlapping functions in gene silencing and telomere maintenance
Meagan Jezek, Alison Gast, Grace Choi, Rushmie Kulkarni, Jeremiah Quijote, Andrew Graham-Yooll, DoHwan Park, Erin M. Green
Epigenetics. 2017; 12(2): 93–104. Published online 2016 Dec 2. doi: 10.1080/15592294.2016.1265712
PMCID:
PMC5330434
AbstractArticlePDF–1.0M
17.
Histone H3K4 methylation regulates deactivation of the spindle assembly checkpoint through direct binding of Mad2
Andria Schibler, Evangelia Koutelou, Junya Tomida, Marenda Wilson-Pham, Li Wang, Yue Lu, Alexa Parra Cabrera, Renee J. Chosed, Wenqian Li, Bing Li, Xiaobing Shi, Richard D. Wood, Sharon Y.R. Dent
Genes Dev. 2016 May 15; 30(10): 1187–1197. doi: 10.1101/gad.278887.116
PMCID:
PMC4888839
AbstractArticlePDF–685K
18.
Transcriptome profiling of Set5 and Set1 methyltransferases: Tools for visualization of gene expression
Glòria Mas Martín, Devin A. King, Pablo E. Garcia-Nieto, Ashby J. Morrison
Genom Data. 2014 Dec; 2: 216–218. Published online 2014 Jul 11. doi: 10.1016/j.gdata.2014.07.001
PMCID:
PMC4140983
AbstractArticlePDF–172K
19.
Set5 and Set1 cooperate to repress gene expression at telomeres and retrotransposons
Glòria Mas Martín, Devin A King, Erin M Green, Pablo E Garcia-Nieto, Richard Alexander, Sean R Collins, Nevan J Krogan, Or P Gozani, Ashby J Morrison
Epigenetics. 2014 Apr 1; 9(4): 513–522. Published online 2014 Jan 17. doi: 10.4161/epi.27645
PMCID:
PMC4121362
AbstractArticlePDF–1.9M
20.
New marks on the block: Set5 methylates H4 lysines 5, 8 and 12
Erin M. Green, Ashby J. Morrison, Or Gozani
Nucleus. 2012 Jul 1; 3(4): 335–339. Published online 2012 Jun 12. doi: 10.4161/nucl.20695
PMCID:
PMC3851190
AbstractArticlePDF–577K

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