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Items: 1 to 20 of 47

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Iron-mediated degradation of ribosomes under oxidative stress is attenuated by manganese
Daniel G. J. Smethurst, Nikolay Kovalev, Erica R. McKenzie, Dimitri G. Pestov, Natalia Shcherbik
J Biol Chem. 2020 Dec 11; 295(50): 17200–17214. Published online 2020 Oct 9. doi: 10.1074/jbc.RA120.015025
PMCID:
PMC7863898
AbstractArticlePDF–2.7M
7.
A New Class of Thioredoxin‐Related Protein Able to Bind Iron–Sulfur Clusters
Hugo Bisio, Mariana Bonilla, Bruno Manta, Martín Graña, Valentina Salzman, Pablo S. Aguilar, Vadim N. Gladyshev, Marcelo A. Comini, Gustavo Salinas
Antioxid Redox Signal. 2016 Feb 1; 24(4): 205–216. Published online 2016 Feb 1. doi: 10.1089/ars.2015.6377
PMCID:
PMC6913166
AbstractArticlePDF–692K
8.
Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation
Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch
PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180
PMCID:
PMC6347170
AbstractArticlePDF–16M
9.
Iron-dependent cleavage of ribosomal RNA during oxidative stress in the yeast Saccharomyces cerevisiae
Jessica A. Zinskie, Arnab Ghosh, Brandon M. Trainor, Daniel Shedlovskiy, Dimitri G. Pestov, Natalia Shcherbik
J Biol Chem. 2018 Sep 14; 293(37): 14237–14248. Published online 2018 Jul 18. doi: 10.1074/jbc.RA118.004174
PMCID:
PMC6139556
AbstractArticlePDF–2.4M
10.
Data on the role of iba57p in free Fe2+ release and O2∙− generation in Saccharomyces cerevisiae
Mauricio Gomez-Gallardo, Luis A. Sánchez, Alma L. Díaz-Pérez, Christian Cortés-Rojo, Jesús Campos-García
Data Brief. 2018 Jun; 18: 198–202. Published online 2018 Mar 11. doi: 10.1016/j.dib.2018.03.023
PMCID:
PMC5996255
AbstractArticlePDF–754K
11.
Cytosolic Proteostasis via Importing of Misfolded Proteins into Mitochondria
Linhao Ruan, Chuankai Zhou, Erli Jin, Andrei Kucharavy, Ying Zhang, Zhihui Wen, Laurence Florens, Rong Li
Nature. Author manuscript; available in PMC 2018 Feb 1.
Published in final edited form as: Nature. 2017 Mar 16; 543(7645): 443–446. Published online 2017 Mar 1. doi: 10.1038/nature21695
PMCID:
PMC5793917
AbstractArticlePDF–3.0M
12.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
13.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
14.
Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast
Zhuo Wang, Samuel A. Danziger, Benjamin D. Heavner, Shuyi Ma, Jennifer J. Smith, Song Li, Thurston Herricks, Evangelos Simeonidis, Nitin S. Baliga, John D. Aitchison, Nathan D. Price
PLoS Comput Biol. 2017 May; 13(5): e1005489. Published online 2017 May 17. doi: 10.1371/journal.pcbi.1005489
PMCID:
PMC5453602
AbstractArticlePDF–2.0M
15.
Loss of Cardiolipin Leads to Perturbation of Acetyl-CoA Synthesis
Vaishnavi Raja, Amit S. Joshi, Guiling Li, Krishna Rao Maddipati, Miriam L. Greenberg
J Biol Chem. 2017 Jan 20; 292(3): 1092–1102. Published online 2016 Dec 9. doi: 10.1074/jbc.M116.753624
PMCID:
PMC5247643
AbstractArticlePDF–1.3M
16.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
17.
Ribosome-Associated Mba1 Escorts Cox2 from Insertion Machinery to Maturing Assembly Intermediates
Isotta Lorenzi, Silke Oeljeklaus, Christin Ronsör, Bettina Bareth, Bettina Warscheid, Peter Rehling, Sven Dennerlein
Mol Cell Biol. 2016 Nov 15; 36(22): 2782–2793. Prepublished online 2016 Aug 22. Published online 2016 Oct 28. doi: 10.1128/MCB.00361-16
PMCID:
PMC5086520
AbstractArticlePDF–2.4M
18.
Role of Nfu1 and Bol3 in iron-sulfur cluster transfer to mitochondrial clients
Andrew Melber, Un Na, Ajay Vashisht, Benjamin D Weiler, Roland Lill, James A Wohlschlegel, Dennis R Winge
eLife. 2016; 5: e15991. Published online 2016 Aug 17. doi: 10.7554/eLife.15991
PMCID:
PMC5014551
AbstractArticlePDF–2.2M
19.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
20.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M

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