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Select item 113138661.

DNA polymerase δ subunit Pol32 binds histone H3-H4 and couples nucleosome assembly with Okazaki fragment processing

Guojun Shi, Chaoqi Yang, Jiale Wu, Yang Lei, Jiazhi Hu, Jianxun Feng, Qing Li

Sci Adv. 2024 Aug 9; 10(32): eado1739. Published online 2024 Aug 9. doi: 10.1126/sciadv.ado1739

PMCID:: PMC11313866

Abstract Article PDF–13M

Select item 110980832.

DNA polymerase delta governs parental histone transfer to DNA replication lagging strand

Congcong Tian, Qin Zhang, Jing Jia, Jiaqi Zhou, Ziwei Zhang, Srinivasu Karri, Jiuhang Jiang, Quinn Dickinson, Yuan Yao, Xiaorong Tang, Yuxin Huang, Ting Guo, Ziwei He, Zheng Liu, Yuan Gao, Xinran Yang, Yuchun Wu, Kui Ming Chan, Daoqin Zhang, Junhong Han, Chuanhe Yu, Haiyun Gan

Proc Natl Acad Sci U S A. 2024 May 14; 121(20): e2400610121. Published online 2024 May 7. doi: 10.1073/pnas.2400610121

PMCID:: PMC11098083

Abstract Article PDF–1.6M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 106225114.

Double-strand breaks induce inverted duplication chromosome rearrangements by a DNA polymerase δ-dependent mechanism

Amr M. Al-Zain, Mattie R. Nester, Iffat Ahmed, Lorraine S. Symington

Nat Commun. 2023; 14: 7020. Published online 2023 Nov 2. doi: 10.1038/s41467-023-42640-5

PMCID:: PMC10622511

Abstract Article PDF–5.4M

Select item 105503215.

Mitochondrial superoxide dismutase Sod2 suppresses nuclear genome instability during oxidative stress

Sonia Vidushi Gupta, Lillian Campos, Kristina Hildegard Schmidt

Genetics. 2023 Oct; 225(2): iyad147. Published online 2023 Aug 29. doi: 10.1093/genetics/iyad147

PMCID:: PMC10550321

Abstract Article PDF–1.2M

Select item 96309866.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 91699138.

The ubiquitin–proteasome system regulates meiotic chromosome organization

Xiao Yang, Meihui Song, Ying Wang, Taicong Tan, Zhongyu Tian, Binyuan Zhai, Xuan Yang, Yingjin Tan, Yanding Cao, Shaojun Dai, Shunxin Wang, Liangran Zhang

Proc Natl Acad Sci U S A. 2022 Apr 26; 119(17): e2106902119. Published online 2022 Apr 19. doi: 10.1073/pnas.2106902119

PMCID:: PMC9169913

Abstract Article PDF–2.1M

Select item 89565789.

The inner side of yeast PCNA contributes to genome stability by mediating interactions with Rad18 and the replicative DNA polymerase δ

Robert Toth, Miklos Halmai, Zsuzsanna Gyorfy, Eva Balint, Ildiko Unk

Sci Rep. 2022; 12: 5163. Published online 2022 Mar 25. doi: 10.1038/s41598-022-09208-7

PMCID:: PMC8956578

Abstract Article PDF–4.2M

Select item 863309810.

Rad9-mediated checkpoint activation is responsible for elevated expansions of GAA repeats in CST-deficient yeast

Ekaterina Spivakovsky-Gonzalez, Erica J Polleys, Chiara Masnovo, Jorge Cebrian, Adrian M Molina-Vargas, Catherine H Freudenreich, Sergei M Mirkin

Genetics. 2021 Oct; 219(2): iyab125. Published online 2021 Aug 6. doi: 10.1093/genetics/iyab125

PMCID:: PMC8633098

Abstract Article PDF–862K

Select item 842120411.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 831953112.

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ

Chloe Du Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Ka-Yi Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar

J Biol Chem. 2021 Aug; 297(2): 100912. Published online 2021 Jun 24. doi: 10.1016/j.jbc.2021.100912

PMCID:: PMC8319531

Abstract Article PDF–2.1M

Select item 831936813.

Interdomain connecting loop and J loop structures determine cross-species compatibility of PCNA

Premlata Kumari, Rajivgandhi Sundaram, Kodavati Manohar, Dileep Vasudevan, Narottam Acharya

J Biol Chem. 2021 Jul; 297(1): 100911. Published online 2021 Jun 25. doi: 10.1016/j.jbc.2021.100911

PMCID:: PMC8319368

Abstract Article PDF–5.6M

Select item 823765214.

Rtt105 promotes high-fidelity DNA replication and repair by regulating the single-stranded DNA-binding factor RPA

Xuejie Wang, Yang Dong, Xiaocong Zhao, Jinbao Li, Jordan Lee, Zhenxin Yan, Shuangshuang Yang, Wenqiang Wu, Ximiao Hou, Guangxue Liu, Yueyue Zhang, Lun Song, Gang Cai, Qing Li, Grzegorz Ira, Xinghua Zhang, Xuefeng Chen

Proc Natl Acad Sci U S A. 2021 Jun 22; 118(25): e2106393118. Published online 2021 Jun 17. doi: 10.1073/pnas.2106393118

PMCID:: PMC8237652

Abstract Article PDF–2.5M

Select item 789172515.

Shared and distinct roles of Esc2 and Mms21 in suppressing genome rearrangements and regulating intracellular sumoylation

Raymond T. Suhandynata, Yong-Qi Gao, Ann L. Zhou, Yusheng Yang, Pang-Che Wang, Huilin Zhou

PLoS One. 2021; 16(2): e0247132. Published online 2021 Feb 18. doi: 10.1371/journal.pone.0247132

PMCID:: PMC7891725

Abstract Article PDF–2.9M

Select item 786512816.

Replication-independent instability of Friedreich’s ataxia GAA repeats during chronological aging

Alexander J. Neil, Julia A. Hisey, Ishtiaque Quasem, Ryan J. McGinty, Marcin Hitczenko, Alexandra N. Khristich, Sergei M. Mirkin

Proc Natl Acad Sci U S A. 2021 Feb 2; 118(5): e2013080118. Published online 2021 Jan 25. doi: 10.1073/pnas.2013080118

PMCID:: PMC7865128

Abstract Article PDF–1.4M

Select item 776297417.

Recombination and Pol ζ Rescue Defective DNA Replication upon Impaired CMG Helicase—Pol ε Interaction

Milena Denkiewicz-Kruk, Malgorzata Jedrychowska, Shizuko Endo, Hiroyuki Araki, Piotr Jonczyk, Michal Dmowski, Iwona J. Fijalkowska

Int J Mol Sci. 2020 Dec; 21(24): 9484. Published online 2020 Dec 13. doi: 10.3390/ijms21249484

PMCID:: PMC7762974

Abstract Article PDF–2.8M

Select item 772021318.

Structure of eukaryotic DNA polymerase δ bound to the PCNA clamp while encircling DNA

Fengwei Zheng, Roxana E. Georgescu, Huilin Li, Michael E. O’Donnell

Proc Natl Acad Sci U S A. 2020 Dec 1; 117(48): 30344–30353. Published online 2020 Nov 17. doi: 10.1073/pnas.2017637117

PMCID:: PMC7720213

Abstract Article PDF–2.9M

Select item 771875119.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 755408820.

Structure and Mechanism of B-family DNA Polymerase ζ Specialized for Translesion DNA Synthesis

Radhika Malik, Mykhailo Kopylov, Yacob Gomez-Llorente, Rinku Jain, Robert E. Johnson, Louise Prakash, Satya Prakash, Iban Ubarretxena-Belandia, Aneel K. Aggarwal

Nat Struct Mol Biol. Author manuscript; available in PMC 2021 Feb 17.

Published in final edited form as: Nat Struct Mol Biol. 2020 Oct; 27(10): 913–924. Published online 2020 Aug 17. doi: 10.1038/s41594-020-0476-7