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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 106476993.

A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20

Ifeoluwapo Matthew Joshua, Meng Lin, Ariestia Mardjuki, Alessandra Mazzola, Thomas Höfken

Int J Mol Sci. 2023 Nov; 24(21): 15916. Published online 2023 Nov 2. doi: 10.3390/ijms242115916

PMCID:: PMC10647699

Abstract Article PDF–5.4M

Select item 105166424.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 96733525.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 91699137.

The ubiquitin–proteasome system regulates meiotic chromosome organization

Xiao Yang, Meihui Song, Ying Wang, Taicong Tan, Zhongyu Tian, Binyuan Zhai, Xuan Yang, Yingjin Tan, Yanding Cao, Shaojun Dai, Shunxin Wang, Liangran Zhang

Proc Natl Acad Sci U S A. 2022 Apr 26; 119(17): e2106902119. Published online 2022 Apr 19. doi: 10.1073/pnas.2106902119

PMCID:: PMC9169913

Abstract Article PDF–2.1M

Select item 91047128.

Pls1 Is a Peroxisomal Matrix Protein with a Role in Regulating Lysine Biosynthesis

Yotam David, Inês Gomes Castro, Eden Yifrach, Chen Bibi, Enas Katawi, Dekel Yahav Har-Shai, Sagie Brodsky, Naama Barkai, Tommer Ravid, Miriam Eisenstein, Shmuel Pietrokovski, Maya Schuldiner, Einat Zalckvar

Cells. 2022 May; 11(9): 1426. Published online 2022 Apr 22. doi: 10.3390/cells11091426

PMCID:: PMC9104712

Abstract Article PDF–3.1M

Select item 86154609.

The San1 Ubiquitin Ligase Avidly Recognizes Misfolded Proteins through Multiple Substrate Binding Sites

Rebeca Ibarra, Heather R. Borror, Bryce Hart, Richard G. Gardner, Gary Kleiger

Biomolecules. 2021 Nov; 11(11): 1619. Published online 2021 Nov 2. doi: 10.3390/biom11111619

PMCID:: PMC8615460

Abstract Article PDF–3.3M

Select item 857106310.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 806308511.

MutSα mismatch repair protein stability is governed by subunit interaction, acetylation, and ubiquitination

Tim Arlow, Junwon Kim, Joanna E. Haye-Bertolozzi, Cristina Balbás Martínez, Caitlin Fay, Emma Zorensky, Mark D. Rose, Alison E. Gammie

G3 (Bethesda) 2021 Mar; 11(3): jkaa065. Published online 2021 Jan 8. doi: 10.1093/g3journal/jkaa065

PMCID:: PMC8063085

Abstract Article PDF–1.2M

Select item 804571412.

Protein quality control degron-containing substrates are differentially targeted in the cytoplasm and nucleus by ubiquitin ligases

Christopher M Hickey, Carolyn Breckel, Mengwen Zhang, William C Theune, Mark Hochstrasser

Genetics. 2021 Jan; 217(1): 1–19. Published online 2020 Dec 22. doi: 10.1093/genetics/iyaa031

PMCID:: PMC8045714

Abstract Article PDF–2.3M

Select item 799398913.

A nuclear-based quality control pathway for non-imported mitochondrial proteins

Viplendra PS Shakya, William A Barbeau, Tianyao Xiao, Christina S Knutson, Max H Schuler, Adam L Hughes

eLife. 2021; 10: e61230. Published online 2021 Mar 18. doi: 10.7554/eLife.61230

PMCID:: PMC7993989

Abstract Article PDF–2.9M

Select item 772018314.

Exo1 recruits Cdc5 polo kinase to MutLγ to ensure efficient meiotic crossover formation

Aurore Sanchez, Céline Adam, Felix Rauh, Yann Duroc, Lepakshi Ranjha, Bérangère Lombard, Xiaojing Mu, Mélody Wintrebert, Damarys Loew, Alba Guarné, Stefano Gnan, Chun-Long Chen, Scott Keeney, Petr Cejka, Raphaël Guérois, Franz Klein, Jean-Baptiste Charbonnier, Valérie Borde

Proc Natl Acad Sci U S A. 2020 Dec 1; 117(48): 30577–30588. Published online 2020 Nov 16. doi: 10.1073/pnas.2013012117

PMCID:: PMC7720183

Abstract Article PDF–2.3M

Select item 739206215.

The Cdc48 Complex Alleviates the Cytotoxicity of Misfolded Proteins by Regulating Ubiquitin Homeostasis

Ryan Higgins, Marie-Helene Kabbaj, Delaney Sherwin, Lauren A. Howell, Alexa Hatcher, Robert J. Tomko, Jr, Yanchang Wang

Cell Rep. Author manuscript; available in PMC 2020 Jul 30.

Published in final edited form as: Cell Rep. 2020 Jul 14; 32(2): 107898. doi: 10.1016/j.celrep.2020.107898

PMCID:: PMC7392062

Abstract Article PDF–1.8M

Select item 726369216.

Genetic Selection Based on a Ste6^*C-HA-Ura3 Substrate Identifies New Cytosolic Quality Control Alleles in Saccharomyces cerevisiae

Shu Ning Chan, Rupali Prasad, Paul Matsudaira

G3 (Bethesda) 2020 Jun; 10(6): 1879–1891. Published online 2020 Apr 16. doi: 10.1534/g3.120.401186

PMCID:: PMC7263692

Abstract Article PDF–2.5M

Select item 713602417.

A protein quality control pathway at the mitochondrial outer membrane

Meredith B Metzger, Jessica L Scales, Mitchell F Dunklebarger, Jadranka Loncarek, Allan M Weissman

eLife. 2020; 9: e51065. Published online 2020 Mar 2. doi: 10.7554/eLife.51065

PMCID:: PMC7136024

Abstract Article PDF–4.8M

Select item 700147718.

The extent of Ssa1/Ssa2 Hsp70 chaperone involvement in nuclear protein quality control degradation varies with the substrate

Ramon D. Jones, Charisma Enam, Rebeca Ibarra, Heather R. Borror, Kaitlyn E. Mostoller, Eric K. Fredrickson, JiaBei Lin, Edward Chuang, Zachary March, James Shorter, Tommer Ravid, Gary Kleiger, Richard G. Gardner

Mol Biol Cell. 2020 Feb 1; 31(3): 221–233. doi: 10.1091/mbc.E18-02-0121

PMCID:: PMC7001477

Abstract Article PDF–2.0M

Select item 670780119.

Distinct proteostasis circuits cooperate in nuclear and cytoplasmic protein quality control

Rahul S. Samant, Christine M. Livingston, Judith Frydman

Nature. Author manuscript; available in PMC 2019 Aug 23.

Published in final edited form as: Nature. 2018 Nov; 563(7731): 407–411. Published online 2018 Oct 31. doi: 10.1038/s41586-018-0678-x

PMCID:: PMC6707801

Abstract Article PDF–2.3M

Select item 629136620.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j