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Select item 102380941.

Shared enhancer gene regulatory networks between wound and oncogenic programs

Swann Floc'hlay, Ramya Balaji, Dimitrije Stanković, Valerie M Christiaens, Carmen Bravo González-Blas, Seppe De Winter, Gert J Hulselmans, Maxime De Waegeneer, Xiaojiang Quan, Duygu Koldere, Mardelle Atkins, Georg Halder, Mirka Uhlirova, Anne-Kathrin Classen, Stein Aerts

eLife. 2023; 12: e81173. Published online 2023 May 3. doi: 10.7554/eLife.81173

PMCID:: PMC10238094

Abstract Article PDF–8.8M

Select item 101057362.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 99689783.

Characterisation of the role and regulation of Ultrabithorax in sculpting fine-scale leg morphology

Alexandra D. Buffry, Sebastian Kittelmann, Alistair P. McGregor

Front Cell Dev Biol. 2023; 11: 1119221. Published online 2023 Feb 13. doi: 10.3389/fcell.2023.1119221

PMCID:: PMC9968978

Abstract Article PDF–4.1M

Select item 93086934.

Transcription Factor Acj6 Controls Dendrite Targeting via A Combinatorial Cell-Surface Code

Qijing Xie, Jiefu Li, Hongjie Li, Namrata D Udeshi, Tanya Svinkina, Daniel Orlin, Sayeh Kohani, Ricardo Guajardo, DR Mani, Chuanyun Xu, Tongchao Li, Shuo Han, Wei Wei, S Andrew Shuster, David J Luginbuhl, Stephen R. Quake, Swetha E. Murthy, Alice Y Ting, Steven A Carr, Liqun Luo

Neuron. Author manuscript; available in PMC 2023 Jul 20.

Published in final edited form as: Neuron. 2022 Jul 20; 110(14): 2299–2314.e8. Published online 2022 May 24. doi: 10.1016/j.neuron.2022.04.026

PMCID:: PMC9308693

Abstract Article PDF–3.9M

Select item 91005215.

Photoperiod-Dependent Expression of MicroRNA in Drosophila

Mirko Pegoraro, Bettina Fishman, Valeria Zonato, Georgios Zouganelis, Amanda Francis, Charalambos P. Kyriacou, Eran Tauber

Int J Mol Sci. 2022 May; 23(9): 4935. Published online 2022 Apr 29. doi: 10.3390/ijms23094935

PMCID:: PMC9100521

Abstract Article PDF–1.5M

Select item 89591756.

A shared ancient enhancer element differentially regulates the bric-a-brac tandem gene duplicates in the developing Drosophila leg

Henri-Marc G. Bourbon, Mikhail H. Benetah, Emmanuelle Guillou, Luis Humberto Mojica-Vazquez, Aissette Baanannou, Sandra Bernat-Fabre, Vincent Loubiere, Frédéric Bantignies, Giacomo Cavalli, Muriel Boube

PLoS Genet. 2022 Mar; 18(3): e1010083. Published online 2022 Mar 16. doi: 10.1371/journal.pgen.1010083

PMCID:: PMC8959175

Abstract Article PDF–2.7M

Select item 78701457.

Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons

Qijing Xie, Maria Brbic, Felix Horns, Sai Saroja Kolluru, Robert C Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J Luginbuhl, Jure Leskovec, Stephen R Quake, Liqun Luo, Hongjie Li

eLife. 2021; 10: e63450. Published online 2021 Jan 11. doi: 10.7554/eLife.63450

PMCID:: PMC7870145

Abstract Article PDF–13M

Select item 69615788.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 68932079.

An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster

Ben J. Vincent, Gavin R. Rice, Gabriella M. Wong, William J. Glassford, Kayla I. Downs, Jessica L. Shastay, Kenechukwu Charles-Obi, Malini Natarajan, Madelaine Gogol, Julia Zeitlinger, Mark Rebeiz

G3 (Bethesda) 2019 Dec; 9(12): 3961–3972. Published online 2019 Oct 16. doi: 10.1534/g3.119.400788

PMCID:: PMC6893207

Abstract Article PDF–2.1M

Select item 668993310.

Transsynaptic Fish-lips signaling prevents misconnections between nonsynaptic partner olfactory neurons

Qijing Xie, Bing Wu, Jiefu Li, Chuanyun Xu, Hongjie Li, David J. Luginbuhl, Xin Wang, Alex Ward, Liqun Luo

Proc Natl Acad Sci U S A. 2019 Aug 6; 116(32): 16068–16073. Published online 2019 Jul 24. doi: 10.1073/pnas.1905832116

PMCID:: PMC6689933

Abstract Article PDF–1.7M

Select item 648595611.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 617725712.

Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila

Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet

eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853

PMCID:: PMC6177257

Abstract Article PDF–4.9M

Select item 616244213.

Specification and Patterning of Drosophila Appendages

Mireya Ruiz-Losada, David Blom-Dahl, Sergio Córdoba, Carlos Estella

J Dev Biol. 2018 Sep; 6(3): 17. Published online 2018 Jul 14. doi: 10.3390/jdb6030017

PMCID:: PMC6162442

Abstract Article PDF–1.4M

Select item 614760814.

cis-regulatory architecture of a short-range EGFR organizing center in the Drosophila melanogaster leg

Susan Newcomb, Roumen Voutev, Aurelie Jory, Rebecca K. Delker, Matthew Slattery, Richard S. Mann

PLoS Genet. 2018 Aug; 14(8): e1007568. Published online 2018 Aug 24. doi: 10.1371/journal.pgen.1007568

PMCID:: PMC6147608

Abstract Article PDF–21M

Select item 609547915.

Classifying Drosophila Olfactory Projection Neuron Subtypes by Single-cell RNA Sequencing

Hongjie Li, Felix Horns, Bing Wu, Qijing Xie, Jiefu Li, Tongchao Li, David J. Luginbuhl, Stephen R. Quake, Liqun Luo

Cell. Author manuscript; available in PMC 2018 Nov 16.

Published in final edited form as: Cell. 2017 Nov 16; 171(5): 1206–1220.e22. doi: 10.1016/j.cell.2017.10.019

PMCID:: PMC6095479

Abstract Article PDF–4.2M

Select item 570780516.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900217.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 557793618.

Asymmetrically deployed actomyosin-based contractility generates a boundary between developing leg segments in Drosophila

Dan Ly, Erin Resch, George Ordiway, Stephen DiNardo

Dev Biol. Author manuscript; available in PMC 2018 Sep 1.

Published in final edited form as: Dev Biol. 2017 Sep 1; 429(1): 165–176. Published online 2017 Jul 6. doi: 10.1016/j.ydbio.2017.06.031

PMCID:: PMC5577936

Abstract Article PDF–1.1M

Select item 540297919.

Tissue-specific enhancer repression through molecular integration of cell signaling inputs

Luis Humberto Mojica-Vázquez, Mikhail H. Benetah, Aissette Baanannou, Sandra Bernat-Fabre, Bart Deplancke, David L. Cribbs, Henri-Marc Bourbon, Muriel Boube

PLoS Genet. 2017 Apr; 13(4): e1006718. Published online 2017 Apr 10. doi: 10.1371/journal.pgen.1006718

PMCID:: PMC5402979

Abstract Article PDF–6.6M

Select item 506896120.

Potential Direct Regulators of the Drosophila yellow Gene Identified by Yeast One-Hybrid and RNAi Screens

Gizem Kalay, Richard Lusk, Mackenzie Dome, Korneel Hens, Bart Deplancke, Patricia J. Wittkopp

G3 (Bethesda) 2016 Oct; 6(10): 3419–3430. Published online 2016 Aug 12. doi: 10.1534/g3.116.032607

PMCID:: PMC5068961

Abstract Article PDF–2.2M

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