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Select item 110241851.

The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis

Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger

Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7

PMCID:: PMC11024185

Abstract Article PDF–7.4M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102879054.

Proper RPA acetylation promotes accurate DNA replication and repair

Xiaoli Gan, Yueyue Zhang, Donghao Jiang, Jingyao Shi, Han Zhao, Chengyu Xie, Yanyan Wang, Jingyan Xu, Xinghua Zhang, Gang Cai, Hailong Wang, Jun Huang, Xuefeng Chen

Nucleic Acids Res. 2023 Jun 23; 51(11): 5565–5583. Published online 2023 May 4. doi: 10.1093/nar/gkad291

PMCID:: PMC10287905

Abstract Article PDF–3.3M

Select item 102478115.

The GET pathway is a major bottleneck for maintaining proteostasis in Saccharomyces cerevisiae

Rebecca Josefson, Navinder Kumar, Xinxin Hao, Beidong Liu, Thomas Nyström

Sci Rep. 2023; 13: 9285. Published online 2023 Jun 7. doi: 10.1038/s41598-023-35666-8

PMCID:: PMC10247811

Abstract Article PDF–8.1M

Select item 100835556.

A DNA damage–induced phosphorylation circuit enhances Mec1^ATR Ddc2^ATRIP recruitment to Replication Protein A

Luke A. Yates, Elias A. Tannous, R. Marc Morgan, Peter M. Burgers, Xiaodong Zhang

Proc Natl Acad Sci U S A. 2023 Apr 4; 120(14): e2300150120. Published online 2023 Mar 30. doi: 10.1073/pnas.2300150120

PMCID:: PMC10083555

Abstract Article PDF–2.3M

Select item 96733527.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 94401238.

Rtt105 regulates RPA function by configurationally stapling the flexible domains

Sahiti Kuppa, Jaigeeth Deveryshetty, Rahul Chadda, Jenna R. Mattice, Nilisha Pokhrel, Vikas Kaushik, Angela Patterson, Nalini Dhingra, Sushil Pangeni, Marisa K. Sadauskas, Sajad Shiekh, Hamza Balci, Taekjip Ha, Xiaolan Zhao, Brian Bothner, Edwin Antony

Nat Commun. 2022; 13: 5152. Published online 2022 Sep 2. doi: 10.1038/s41467-022-32860-6

PMCID:: PMC9440123

Abstract Article PDF–2.8M

Select item 92098119.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 859153610.

DNA asymmetry promotes SUMO modification of the single‐stranded DNA‐binding protein RPA

Laurent Cappadocia, Tomasz Kochańczyk, Christopher D Lima

EMBO J. 2021 Nov 15; 40(22): e103787. Published online 2021 Sep 29. doi: 10.15252/embj.2019103787

PMCID:: PMC8591536

Abstract Article PDF–3.1M

Select item 833652411.

Yeast Bromodomain Factor 1 and Its Human Homolog TAF1 Play Conserved Roles in Promoting Homologous Recombination

Haoyang Peng, Simin Zhang, Yihan Peng, Shuangyi Zhu, Xin Zhao, Xiaocong Zhao, Shuangshuang Yang, Guangxue Liu, Yang Dong, Xiaoli Gan, Qing Li, Xinghua Zhang, Huadong Pei, Xuefeng Chen

Adv Sci (Weinh) 2021 Aug; 8(15): 2100753. Published online 2021 May 30. doi: 10.1002/advs.202100753

PMCID:: PMC8336524

Abstract Article PDF–6.4M

Select item 832691612.

Generation of Fluorescent Versions of Saccharomyces cerevisiae RPA to Study the Conformational Dynamics of Its ssDNA-Binding Domains

Sahiti Kuppa, Nilisha Pokhrel, Elliot Corless, Sofia Origanti, Edwin Antony

Methods Mol Biol. Author manuscript; available in PMC 2022 Jan 1.

Published in final edited form as: Methods Mol Biol. 2021; 2281: 151–168. doi: 10.1007/978-1-0716-1290-3_9

PMCID:: PMC8326916

Abstract Article PDF–565K

Select item 812692313.

Phosphoproteomics reveals a distinctive Mec1/ATR signaling response upon DNA end hyper‐resection

Ethan J Sanford, William J Comstock, Vitor M Faça, Stephanie C Vega, Robert Gnügge, Lorraine S Symington, Marcus B Smolka

EMBO J. 2021 May 17; 40(10): e104566. Published online 2021 Mar 25. doi: 10.15252/embj.2020104566

PMCID:: PMC8126923

Abstract Article PDF–2.3M

Select item 738643314.

Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell

Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone

Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.

Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855

PMCID:: PMC7386433

Abstract Article PDF–1.0M

Select item 734433915.

Relocation of Collapsed Forks to the Nuclear Pore Complex Depends on Sumoylation of DNA Repair Proteins and Permits Rad51 Association

Jenna M. Whalen, Nalini Dhingra, Lei Wei, Xiaolan Zhao, Catherine H. Freudenreich

Cell Rep. Author manuscript; available in PMC 2020 Jul 8.

Published in final edited form as: Cell Rep. 2020 May 12; 31(6): 107635. doi: 10.1016/j.celrep.2020.107635

PMCID:: PMC7344339

Abstract Article PDF–1.9M

Select item 717376216.

Single-Stranded DNA Curtains for Studying the Srs2 Helicase Using Total Internal Reflection Fluorescence Microscopy

Luisina De Tullio, Kyle Kaniecki, Eric C. Greene

Methods Enzymol. Author manuscript; available in PMC 2020 Apr 21.

Published in final edited form as: Methods Enzymol. 2018; 600: 407–437. Published online 2018 Feb 1. doi: 10.1016/bs.mie.2017.12.004

PMCID:: PMC7173762

Abstract Article PDF–1.4M

Select item 671577417.

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis

Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos

Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022

PMCID:: PMC6715774

Abstract Article

Select item 669204718.

Ddc2^ATRIP promotes Mec1^ATR activation at RPA-ssDNA tracts

Himadri Biswas, Greicy Goto, Weibin Wang, Patrick Sung, Katsunori Sugimoto

PLoS Genet. 2019 Aug; 15(8): e1008294. Published online 2019 Aug 1. doi: 10.1371/journal.pgen.1008294

PMCID:: PMC6692047

Abstract Article PDF–2.6M

Select item 668908619.

The Hsp90 isoforms from S. cerevisiae differ in structure, function and client range

Hannah Girstmair, Franziska Tippel, Abraham Lopez, Katarzyna Tych, Frank Stein, Per Haberkant, Philipp Werner Norbert Schmid, Dominic Helm, Matthias Rief, Michael Sattler, Johannes Buchner

Nat Commun. 2019; 10: 3626. Published online 2019 Aug 9. doi: 10.1038/s41467-019-11518-w

PMCID:: PMC6689086

Abstract Article PDF–2.3M

Select item 660103720.

Competing interaction partners modulate the activity of Sgs1 helicase during DNA end resection

Kristina Kasaciunaite, Fergus Fettes, Maryna Levikova, Peter Daldrop, Roopesh Anand, Petr Cejka, Ralf Seidel

EMBO J. 2019 Jul 1; 38(13): e101516. Published online 2019 Jun 7. doi: 10.15252/embj.2019101516

PMCID:: PMC6601037

Abstract Article PDF–6.0M

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