PMC Links for GEO Profiles (Select 25860989) - PMC

Select item 57122511.

DDB2 is a Novel Regulator of Wnt-Signaling in Colon Cancer

Shuo Huang, Damiano Fantini, Bradley J. Merrill, Srilata Bagchi, Grace Guzman, Pradip Raychaudhuri

Cancer Res. Author manuscript; available in PMC 2018 Dec 1.

Published in final edited form as: Cancer Res. 2017 Dec 1; 77(23): 6562–6575. Published online 2017 Oct 11. doi: 10.1158/0008-5472.CAN-17-1570

PMCID:: PMC5712251

Abstract Article PDF–2.7M

Select item 48755712.

Autophagic UVRAG Promotes UV-induced Photolesion Repair by Activation of the CRL4^DDB2 E3 Ligase

Yongfei Yang, Shanshan He, Qiaoxiu Wang, Fan Li, Mi-Jeong Kwak, Sally Chen, Douglas O’Connell, Tian Zhang, Sara Dolatshahi Pirooz, YongHeui Jeon, Nyam-Osor Chimge, Baruch Frenkel, Younho Choi, Grace M. Aldrovandi, Byung-Ha Oh, Zengqiang Yuan, Chengyu Liang

Mol Cell. Author manuscript; available in PMC 2017 May 19.

Published in final edited form as: Mol Cell. 2016 May 19; 62(4): 507–519. doi: 10.1016/j.molcel.2016.04.014

PMCID:: PMC4875571

Abstract Article PDF–2.6M

Select item 36869763.

DDB2 Suppresses Epithelial to Mesenchymal Transition in Colon Cancer

Nilotpal Roy, Prashant V. Bommi, Uppoor G. Bhat, Shaumick Bhattacharjee, Indira Elangovan, Jing Li, Krushna C. Patra, Dragana Kopanja, Adam Blunier, Richard Benya, Srilata Bagchi, Pradip Raychaudhuri

Cancer Res. Author manuscript; available in PMC 2014 Jun 15.

Published in final edited form as: Cancer Res. 2013 Jun 15; 73(12): 3771–3782. Published online 2013 Apr 22. doi: 10.1158/0008-5472.CAN-12-4069

PMCID:: PMC3686976

Abstract Article PDF–5.2M

Select item 35724104.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 35628365.

Role of poly(ADP-ribose) polymerase-1 in the removal of UV-induced DNA lesions by nucleotide excision repair

Mihaela Robu, Rashmi G. Shah, Nancy Petitclerc, Julie Brind’Amour, Febitha Kandan-Kulangara, Girish M. Shah

Proc Natl Acad Sci U S A. 2013 Jan 29; 110(5): 1658–1663. Published online 2013 Jan 14. doi: 10.1073/pnas.1209507110

PMCID:: PMC3562836

Abstract Article PDF–1.0M

Select item 33283936.

DDB2 promotes chromatin decondensation at UV-induced DNA damage

Martijn S. Luijsterburg, Michael Lindh, Klara Acs, Mischa G. Vrouwe, Alex Pines, Haico van Attikum, Leon H. Mullenders, Nico P. Dantuma

J Cell Biol. 2012 Apr 16; 197(2): 267–281. doi: 10.1083/jcb.201106074

PMCID:: PMC3328393

Abstract Article PDF–2.9M

Select item 32709597.

p21 Cooperates with DDB2 Protein in Suppression of Ultraviolet Ray-induced Skin Malignancies

Tanya Stoyanova, Nilotpal Roy, Shaumick Bhattacharjee, Dragana Kopanja, Ted Valli, Srilata Bagchi, Pradip Raychaudhuri

J Biol Chem. 2012 Jan 27; 287(5): 3019–3028. Published online 2011 Dec 13. doi: 10.1074/jbc.M111.295816

PMCID:: PMC3270959

Abstract Article PDF–4.1M

Select item 31780598.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 31101519.

A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58

Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara

Dev Cell. Author manuscript; available in PMC 2011 Jun 7.

Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011

PMCID:: PMC3110151

Abstract Article PDF–2.0M

Select item 289426310.

Interaction between UV-damaged DNA Binding Activity Proteins and the c-Abl Tyrosine Kinase

Feng Cong, Jean Tang, Byung Joon Hwang, Bao Q. Vuong, Gilbert Chu, Stephen P. Goff

J Biol Chem. Author manuscript; available in PMC 2010 Jun 29.

Published in final edited form as: J Biol Chem. 2002 Sep 20; 277(38): 34870–34878. Published online 2002 Jul 9. doi: 10.1074/jbc.M204416200

PMCID:: PMC2894263

Abstract Article PDF–623K

Select item 289289111.

Tumor-prone phenotype of the DDB2-deficient mice

Taewon Yoon, Amit Chakrabortty, Roberta Franks, Ted Valli, Hiroaki Kiyokawa, Pradip Raychaudhuri

Oncogene. Author manuscript; available in PMC 2010 Jun 28.

Published in final edited form as: Oncogene. 2005 Jan 13; 24(3): 469–478. doi: 10.1038/sj.onc.1208211

PMCID:: PMC2892891

Abstract Article PDF–4.4M

Select item 270555912.

DDB2 decides cell fate following DNA damage

Tanya Stoyanova, Nilotpal Roy, Dragana Kopanja, Srilata Bagchi, Pradip Raychaudhuri

Proc Natl Acad Sci U S A. 2009 Jun 30; 106(26): 10690–10695. Published online 2009 Jun 16. doi: 10.1073/pnas.0812254106

PMCID:: PMC2705559

Abstract Article PDF–1.5M

Select item 255627013.

Large-scale gene trapping in C57BL/6N mouse embryonic stem cells

Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin

Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108

PMCID:: PMC2556270

Abstract Article PDF–493K

Select item 222330514.

The Xeroderma Pigmentosum Group E Gene Product DDB2 Activates Nucleotide Excision Repair by Regulating the Level of p21^Waf1/Cip1

Tanya Stoyanova, Taewon Yoon, Dragana Kopanja, Margalit B. Mokyr, Pradip Raychaudhuri

Mol Cell Biol. 2008 Jan; 28(1): 177–187. Published online 2007 Oct 29. doi: 10.1128/MCB.00880-07

PMCID:: PMC2223305

Abstract Article PDF–537K

Select item 35705015.

DDB2 gene disruption leads to skin tumors and resistance to apoptosis after exposure to ultraviolet light but not a chemical carcinogen

Toshiki Itoh, Dragana Cado, Ryoichi Kamide, Stuart Linn

Proc Natl Acad Sci U S A. 2004 Feb 17; 101(7): 2052–2057. Published online 2004 Feb 9. doi: 10.1073/pnas.0306551101

PMCID:: PMC357050

Abstract Article PDF–634K

Select item 31099216.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098017.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924118.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 13377919.

p53 Binds and Activates the Xeroderma Pigmentosum DDB2 Gene in Humans but Not Mice

Thomas Tan, Gilbert Chu

Mol Cell Biol. 2002 May; 22(10): 3247–3254. doi: 10.1128/MCB.22.10.3247-3254.2002

PMCID:: PMC133779

Abstract Article PDF–395K

Select item 1683320.

Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray

Tetsuya S. Tanaka, Saied A. Jaradat, Meng K. Lim, George J. Kargul, Xiaohong Wang, Marija J. Grahovac, Serafino Pantano, Yuri Sano, Yulan Piao, Ramaiah Nagaraja, Hirofumi Doi, William H. Wood, III, Kevin G. Becker, Minoru S. H. Ko

Proc Natl Acad Sci U S A. 2000 Aug 1; 97(16): 9127–9132. doi: 10.1073/pnas.97.16.9127

PMCID:: PMC16833

Abstract Article PDF–847K

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