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Items: 1 to 20 of 30

1.
HOXD8 suppresses renal cell carcinoma growth by upregulating SHMT1 expression
Yang Yang, Minghui Zhang, Yaxuan Zhao, Tingzhi Deng, Xiang Zhou, Hanxu Qian, Mengxuan Wang, Chuanchuan Zhang, Zhengjin Huo, Zijun Mao, Zhufeng Shao, Mengxue Liu, Chunhua Yang, Chunhua Lin, Fuyi Xu, Geng Tian, Yin Zhang
Cancer Sci. 2023 Dec; 114(12): 4583–4595. Published online 2023 Sep 26. doi: 10.1111/cas.15982
PMCID:
PMC10728000
AbstractArticlePDF–13M
2.
Developmental and evolutionary comparative analysis of a regulatory landscape in mouse and chicken
Aurélie Hintermann, Isabel Guerreiro, Lucille Lopez-Delisle, Christopher Chase Bolt, Sandra Gitto, Denis Duboule, Leonardo Beccari
Development. 2022 Jun 15; 149(12): dev200594. Published online 2022 Jun 30. doi: 10.1242/dev.200594
PMCID:
PMC9307994
AbstractArticle
3.
Sequential in cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse HoxD cluster
Ana Rita Amândio, Leonardo Beccari, Lucille Lopez-Delisle, Bénédicte Mascrez, Jozsef Zakany, Sandra Gitto, Denis Duboule
Genes Dev. 2021 Nov 1; 35(21-22): 1490–1509. doi: 10.1101/gad.348934.121
PMCID:
PMC8559674
AbstractArticlePDF–22M
4.
Chromatin topology and the timing of enhancer function at the HoxD locus
Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Andréa Willemin, Leonardo Beccari, Sandra Gitto, Bénédicte Mascrez, Denis Duboule
Proc Natl Acad Sci U S A. 2020 Dec 8; 117(49): 31231–31241. Published online 2020 Nov 23. doi: 10.1073/pnas.2015083117
PMCID:
PMC7733857
AbstractArticlePDF–2.5M
5.
Lysine demethylase 7a regulates murine anterior-posterior development by modulating the transcription of Hox gene cluster
Yoshiki Higashijima, Nao Nagai, Masamichi Yamamoto, Taro Kitazawa, Yumiko K. Kawamura, Akashi Taguchi, Natsuko Nakada, Masaomi Nangaku, Tetsushi Furukawa, Hiroyuki Aburatani, Hiroki Kurihara, Youichiro Wada, Yasuharu Kanki
Commun Biol. 2020; 3: 725. Published online 2020 Nov 30. doi: 10.1038/s42003-020-01456-5
PMCID:
PMC7704666
AbstractArticlePDF–1.3M
6.
Lin28a/let-7 pathway modulates the Hox code via Polycomb regulation during axial patterning in vertebrates
Tempei Sato, Kensuke Kataoka, Yoshiaki Ito, Shigetoshi Yokoyama, Masafumi Inui, Masaki Mori, Satoru Takahashi, Keiichi Akita, Shuji Takada, Hiroe Ueno-Kudoh, Hiroshi Asahara
eLife. 2020; 9: e53608. Published online 2020 May 29. doi: 10.7554/eLife.53608
PMCID:
PMC7259951
AbstractArticlePDF–5.5M
7.
Impact of genome architecture on the functional activation and repression of Hox regulatory landscapes
Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Nayuta Yakushiji-Kaminatsui, Asier Ullate-Agote, Denis Duboule
BMC Biol. 2019; 17: 55. Published online 2019 Jul 12. doi: 10.1186/s12915-019-0677-x
PMCID:
PMC6626364
AbstractArticlePDF–1.9M
8.
The constrained architecture of mammalian Hox gene clusters
Fabrice Darbellay, Célia Bochaton, Lucille Lopez-Delisle, Bénédicte Mascrez, Patrick Tschopp, Saskia Delpretti, Jozsef Zakany, Denis Duboule
Proc Natl Acad Sci U S A. 2019 Jul 2; 116(27): 13424–13433. Published online 2019 Jun 17. doi: 10.1073/pnas.1904602116
PMCID:
PMC6613147
AbstractArticlePDF–2.5M
9.
The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
Eddie Rodríguez-Carballo, Lucille Lopez-Delisle, Ye Zhan, Pierre J. Fabre, Leonardo Beccari, Imane El-Idrissi, Thi Hanh Nguyen Huynh, Hakan Ozadam, Job Dekker, Denis Duboule
Genes Dev. 2017 Nov 15; 31(22): 2264–2281. doi: 10.1101/gad.307769.117
PMCID:
PMC5769770
AbstractArticlePDF–14M
10.
Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape
Ruben Schep, Anamaria Necsulea, Eddie Rodríguez-Carballo, Isabel Guerreiro, Guillaume Andrey, Thi Hanh Nguyen Huynh, Virginie Marcet, Jozsef Zákány, Denis Duboule, Leonardo Beccari
Proc Natl Acad Sci U S A. 2016 Nov 29; 113(48): E7720–E7729. Published online 2016 Nov 15. doi: 10.1073/pnas.1617141113
PMCID:
PMC5137715
AbstractArticlePDF–1.4M
11.
Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan
Isabel Guerreiro, Sandra Gitto, Ana Novoa, Julien Codourey, Thi Hanh Nguyen Huynh, Federico Gonzalez, Michel C Milinkovitch, Moises Mallo, Denis Duboule
eLife. 2016; 5: e16087. Published online 2016 Aug 1. doi: 10.7554/eLife.16087
PMCID:
PMC4969037
AbstractArticlePDF–2.3M
12.
A role for HOX13 proteins in the regulatory switch between TADs at the HoxD locus
Leonardo Beccari, Nayuta Yakushiji-Kaminatsui, Joost M. Woltering, Anamaria Necsulea, Nicolas Lonfat, Eddie Rodríguez-Carballo, Benedicte Mascrez, Shiori Yamamoto, Atsushi Kuroiwa, Denis Duboule
Genes Dev. 2016 May 15; 30(10): 1172–1186. doi: 10.1101/gad.281055.116
PMCID:
PMC4888838
AbstractArticlePDF–1.2M
13.
Independent regulation of vertebral number and vertebral identity by microRNA-196 paralogs
Siew Fen Lisa Wong, Vikram Agarwal, Jennifer H. Mansfield, Nicolas Denans, Matthew G. Schwartz, Haydn M. Prosser, Olivier Pourquié, David P. Bartel, Clifford J. Tabin, Edwina McGlinn
Proc Natl Acad Sci U S A. 2015 Sep 1; 112(35): E4884–E4893. Published online 2015 Aug 17. doi: 10.1073/pnas.1512655112
PMCID:
PMC4568285
AbstractArticlePDF–1.6M
14.
Nipbl and Mediator Cooperatively Regulate Gene Expression to Control Limb Development
Akihiko Muto, Shingo Ikeda, Martha E. Lopez-Burks, Yutaka Kikuchi, Anne L. Calof, Arthur D. Lander, Thomas F. Schilling
PLoS Genet. 2014 Sep; 10(9): e1004671. Published online 2014 Sep 25. doi: 10.1371/journal.pgen.1004671
PMCID:
PMC4177752
AbstractArticlePDF–2.1M
15.
A Genome-Wide Screen to Identify Transcription Factors Expressed in Pelvic Ganglia of the Lower Urinary Tract
Carrie B. Wiese, Sara Ireland, Nicole L. Fleming, Jing Yu, M. Todd Valerius, Kylie Georgas, Han Sheng Chiu, Jane Brennan, Jane Armstrong, Melissa H. Little, Andrew P. McMahon, E. Michelle Southard-Smith
Front Neurosci. 2012; 6: 130. Published online 2012 Sep 12. doi: 10.3389/fnins.2012.00130
PMCID:
PMC3439845
AbstractArticlePDF–1.4M
16.
Anterior-posterior differences in HoxD chromatin topology in limb development
Iain Williamson, Ragnhild Eskeland, Laura A. Lettice, Alison E. Hill, Shelagh Boyle, Graeme R. Grimes, Robert E. Hill, Wendy A. Bickmore
Development. 2012 Sep 1; 139(17): 3157–3167. doi: 10.1242/dev.081174
PMCID:
PMC3413162
AbstractArticle
17.
Reduction of Hox Gene Expression by Histone H1 Depletion
Yunzhe Zhang, Zheng Liu, Magdalena Medrzycki, Kaixiang Cao, Yuhong Fan
PLoS One. 2012; 7(6): e38829. Published online 2012 Jun 11. doi: 10.1371/journal.pone.0038829
PMCID:
PMC3372500
AbstractArticlePDF–2.2M
18.
Global Gene Expression Analysis of Murine Limb Development
Leila Taher, Nicole M. Collette, Deepa Murugesh, Evan Maxwell, Ivan Ovcharenko, Gabriela G. Loots
PLoS One. 2011; 6(12): e28358. Published online 2011 Dec 9. doi: 10.1371/journal.pone.0028358
PMCID:
PMC3235105
AbstractArticlePDF–4.5M
19.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
20.
Structural and Functional Differences in the Long Non-Coding RNA Hotair in Mouse and Human
Patrick Schorderet, Denis Duboule
PLoS Genet. 2011 May; 7(5): e1002071. Published online 2011 May 26. doi: 10.1371/journal.pgen.1002071
PMCID:
PMC3102750
AbstractArticlePDF–1.4M

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