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Select item 88223431.

Degradation of the Escherichia coli Essential Proteins DapB and Dxr Results in Oxidative Stress, which Contributes to Lethality through Incomplete Base Excision Repair

Charley C. Gruber, Vignesh M. P. Babu, Kamren Livingston, Heer Joisher, Graham C. Walker

mBio. 2022 Jan-Feb; 13(1): e03756-21. Published online 2022 Feb 8. doi: 10.1128/mbio.03756-21

PMCID:: PMC8822343

Abstract Article PDF–4.1M

Select item 35382172.

Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load

Sébastien Wielgoss, Jeffrey E. Barrick, Olivier Tenaillon, Michael J. Wiser, W. James Dittmar, Stéphane Cruveiller, Béatrice Chane-Woon-Ming, Claudine Médigue, Richard E. Lenski, Dominique Schneider

Proc Natl Acad Sci U S A. 2013 Jan 2; 110(1): 222–227. Published online 2012 Dec 17. doi: 10.1073/pnas.1219574110

PMCID:: PMC3538217

Abstract Article PDF–378K

Select item 27899783.

Adenine Removal Activity and Bacterial Complementation with the human MutY homologue (MUTYH) and Y165C, G382D, P391L and Q324R variants associated with colorectal cancer

Sucharita Kundu, Megan K. Brinkmeyer, Alison L. Livingston, Sheila S. David

DNA Repair (Amst) Author manuscript; available in PMC 2010 Dec 3.

Published in final edited form as: DNA Repair (Amst). 2009 Dec 3; 8(12): 1400–1410. doi: 10.1016/j.dnarep.2009.09.009

PMCID:: PMC2789978

Abstract Article PDF–1.7M

Select item 27593484.

Unnatural substrates reveal the importance of 8-oxoguanine for in vivo mismatch repair by MutY

Alison L. Livingston, Valerie L. O’Shea, Taewoo Kim, Eric T. Kool, Sheila S. David

Nat Chem Biol. Author manuscript; available in PMC 2009 Oct 8.

Published in final edited form as: Nat Chem Biol. 2008 Jan; 4(1): 51–58. Published online 2007 Nov 18. doi: 10.1038/nchembio.2007.40

PMCID:: PMC2759348

Abstract Article PDF–1.1M

Select item 27526005.

Finding needles in DNA stacks

Cynthia J. Burrows, Aaron M. Fleming

Proc Natl Acad Sci U S A. 2009 Sep 22; 106(38): 16010–16011. Published online 2009 Sep 15. doi: 10.1073/pnas.0909136106

PMCID:: PMC2752600

Article PDF–453K

Select item 27412346.

Redox signaling between DNA repair proteins for efficient lesion detection

Amie K. Boal, Joseph C. Genereux, Pamela A. Sontz, Jeffrey A. Gralnick, Dianne K. Newman, Jacqueline K. Barton

Proc Natl Acad Sci U S A. 2009 Sep 8; 106(36): 15237–15242. Published online 2009 Aug 31. doi: 10.1073/pnas.0908059106

PMCID:: PMC2741234

Abstract Article PDF–1.0M

Select item 27145937.

Insights into the role of Val45 and Gln182 of Escherichia coli MutY in DNA substrate binding and specificity

Po-Wen Chang, Amrita Madabushi, A-Lien Lu

BMC Biochem. 2009; 10: 19. Published online 2009 Jun 12. doi: 10.1186/1471-2091-10-19

PMCID:: PMC2714593

Abstract Article PDF–889K

Select item 26983968.

The Escherichia coli Mismatch Repair Protein MutL Recruits the Vsr and MutH Endonucleases in Response to DNA Damage

Yaroslava Y. Polosina, Justin Mui, Photini Pitsikas, Claire G. Cupples

J Bacteriol. 2009 Jun; 191(12): 4041–4043. Published online 2009 Apr 17. doi: 10.1128/JB.00066-09

PMCID:: PMC2698396

Abstract Article PDF–241K

Select item 26778699.

PCNA monoubiquitylation and DNA polymerase η ubiquitin-binding domain are required to prevent 8-oxoguanine-induced mutagenesis in Saccharomyces cerevisiae

Patricia Auffret van der Kemp, Marcelo de Padula, Guenaelle Burguiere-Slezak, Helle D. Ulrich, Serge Boiteux

Nucleic Acids Res. 2009 May; 37(8): 2549–2559. Published online 2009 Mar 5. doi: 10.1093/nar/gkp105

PMCID:: PMC2677869

Abstract Article PDF–2.3M

Select item 254744910.

Theoretical Study of DNA Damage Recognition via Electron Transfer from the [4Fe-4S] Complex of MutY

Jong-Chin Lin, Rajiv R. P. Singh, Daniel L. Cox

Biophys J. 2008 Oct 1; 95(7): 3259–3268. Published online 2008 Jul 3. doi: 10.1529/biophysj.108.132183

PMCID:: PMC2547449

Abstract Article PDF–406K

Select item 225865711.

Role of Accessory DNA Polymerases in DNA Replication in Escherichia coli: Analysis of the dnaX36 Mutator Mutant

Damian Gawel, Phuong T. Pham, Iwona J. Fijalkowska, Piotr Jonczyk, Roel M. Schaaper

J Bacteriol. 2008 Mar; 190(5): 1730–1742. Published online 2007 Dec 21. doi: 10.1128/JB.01463-07

PMCID:: PMC2258657

Abstract Article PDF–578K

Select item 209420912.

DNA Repair Glycosylases with a [4Fe-4S] Cluster: A Redox Cofactor for DNA-mediated Charge Transport?

Amie K. Boal, Eylon Yavin, Jacqueline K. Barton

J Inorg Biochem. Author manuscript; available in PMC 2008 Nov 1.

Published in final edited form as: J Inorg Biochem. 2007 Nov; 101(11-12): 1913–1921. Published online 2007 May 17. doi: 10.1016/j.jinorgbio.2007.05.001

PMCID:: PMC2094209

Abstract Article PDF–1.0M

Select item 204520413.

The mutT Defect Does Not Elevate Chromosomal Fragmentation in Escherichia coli Because of the Surprisingly Low Levels of MutM/MutY-Recognized DNA Modifications

Ella Rotman, Andrei Kuzminov

J Bacteriol. 2007 Oct; 189(19): 6976–6988. Published online 2007 Jul 6. doi: 10.1128/JB.00776-07

PMCID:: PMC2045204

Abstract Article PDF–564K

Select item 179728514.

Physical and Functional Interactions between Escherichia coli MutY Glycosylase and Mismatch Repair Protein MutS

Haibo Bai, A-Lien Lu

J Bacteriol. 2007 Feb; 189(3): 902–910. Published online 2006 Nov 17. doi: 10.1128/JB.01513-06

PMCID:: PMC1797285

Abstract Article PDF–296K

Select item 168148115.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 146232016.

Enrichment and elimination of mutY mutators in Escherichia coli populations.

Lucinda Notley-McRobb, Shona Seeto, Thomas Ferenci

Genetics. 2002 Nov; 162(3): 1055–1062. doi: 10.1093/genetics/162.3.1055

PMCID:: PMC1462320

Summary PDF–173K

Select item 138369717.

Physical and functional interactions between Escherichia coli MutY and endonuclease VIII

A-Lien Lu, Chih-Yung Lee, Lina Li, Xianghong Li

Biochem J. 2006 Jan 1; 393(Pt 1): 381–387. Prepublished online 2005 Oct 4. Published online 2005 Dec 12. doi: 10.1042/BJ20051133

PMCID:: PMC1383697

Abstract Article PDF–474K

Select item 132520018.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405