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Items: 1 to 20 of 54

1.
Histone variant H2A.Z is needed for efficient transcription-coupled NER and genome integrity in UV challenged yeast cells
Hélène Gaillard, Toni Ciudad, Andrés Aguilera, Ralf E. Wellinger
PLoS Genet. 2024 Sep; 20(9): e1011300. Published online 2024 Sep 10. doi: 10.1371/journal.pgen.1011300
PMCID:
PMC11414981
AbstractArticlePDF–2.9M
2.
Elf1 promotes transcription-coupled repair in yeast by using its C-terminal domain to bind TFIIH
Kathiresan Selvam, Jun Xu, Hannah E. Wilson, Juntaek Oh, Qingrong Li, Dong Wang, John J. Wyrick
Nat Commun. 2024; 15: 6223. Published online 2024 Jul 23. doi: 10.1038/s41467-024-50539-y
PMCID:
PMC11266705
AbstractArticlePDF–2.5M
3.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
4.
Elf1 promotes Rad26’s interaction with lesion-arrested Pol II for transcription-coupled repair
Reta D. Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E. Leschziner
Proc Natl Acad Sci U S A. 2024 Jan 16; 121(3): e2314245121. Published online 2024 Jan 9. doi: 10.1073/pnas.2314245121
PMCID:
PMC10801861
AbstractArticlePDF–3.3M
5.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
6.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
7.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
8.
Yeast Protein Asf1 Possesses Modulating Activity towards Protein Kinase CK2
Andrea Baier, Ryszard Szyszka, Monika Elżbieta Jach
Int J Mol Sci. 2022 Dec; 23(24): 15764. Published online 2022 Dec 12. doi: 10.3390/ijms232415764
PMCID:
PMC9779303
AbstractArticlePDF–3.6M
9.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
10.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
11.
Systematic Screening of Penetratin’s Protein Targets by Yeast Proteome Microarrays
Pramod Shah, Chien-Sheng Chen
Int J Mol Sci. 2022 Jan; 23(2): 712. Published online 2022 Jan 10. doi: 10.3390/ijms23020712
PMCID:
PMC8775591
AbstractArticlePDF–5.0M
12.
Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis
Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.
J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155
PMCID:
PMC8576917
AbstractArticlePDF–7.4M
13.
The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription
David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz
J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051
PMCID:
PMC8353526
AbstractArticle
14.
Opposite roles of transcription elongation factors Spt4/5 and Elf1 in RNA polymerase II transcription through B-form versus non-B DNA structures
Jun Xu, Jenny Chong, Dong Wang
Nucleic Acids Res. 2021 May 21; 49(9): 4944–4953. Published online 2021 Apr 20. doi: 10.1093/nar/gkab240
PMCID:
PMC8136819
AbstractArticlePDF–2.4M
15.
Essential histone chaperones collaborate to regulate transcription and chromatin integrity
Olga Viktorovskaya, James Chuang, Dhawal Jain, Natalia I. Reim, Francheska López-Rivera, Magdalena Murawska, Dan Spatt, L. Stirling Churchman, Peter J. Park, Fred Winston
Genes Dev. 2021 May 1; 35(9-10): 698–712. doi: 10.1101/gad.348431.121
PMCID:
PMC8091981
AbstractArticlePDF–6.4M
16.
A genetic map of the response to DNA damage in human cells
Michele Olivieri, Tiffany Cho, Alejandro Álvarez-Quilón, Kejiao Li, Matthew J. Schellenberg, Michal Zimmermann, Nicole Hustedt, Silvia Emma Rossi, Salomé Adam, Henrique Melo, Anne Margriet Heijink, Guillermo Sastre-Moreno, Nathalie Moatti, Rachel K. Szilard, Andrea McEwan, Alexanda K. Ling, Almudena Serrano-Benitez, Tajinder Ubhi, Sumin Feng, Judy Pawling, Irene Delgado-Sainz, Michael W. Ferguson, James W. Dennis, Grant W. Brown, Felipe Cortés-Ledesma, R. Scott Williams, Alberto Martin, Dongyi Xu, Daniel Durocher
Cell. Author manuscript; available in PMC 2021 Jul 23.
Published in final edited form as: Cell. 2020 Jul 23; 182(2): 481–496.e21. Published online 2020 Jul 9. doi: 10.1016/j.cell.2020.05.040
PMCID:
PMC7384976
AbstractArticlePDF–2.5M
17.
Binding of eIF3 in complex with eIF5 and eIF1 to the 40S ribosomal subunit is accompanied by dramatic structural changes
Jakub Zeman, Yuzuru Itoh, Zdeněk Kukačka, Michal Rosůlek, Daniel Kavan, Tomáš Kouba, Myrte E Jansen, Mahabub P Mohammad, Petr Novák, Leoš S Valášek
Nucleic Acids Res. 2019 Sep 5; 47(15): 8282–8300. Published online 2019 Jul 10. doi: 10.1093/nar/gkz570
PMCID:
PMC6735954
AbstractArticlePDF–15M
18.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
19.
Systematic Analysis of Complex Genetic Interactions
Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers
Science. Author manuscript; available in PMC 2018 Nov 4.
Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729
PMCID:
PMC6215713
AbstractArticlePDF–1.9M
20.
Common and divergent features of galactose-1-phosphate and fructose-1-phosphate toxicity in yeast
Patrick A. Gibney, Ariel Schieler, Jonathan C. Chen, Jessie M. Bacha-Hummel, Maxim Botstein, Matthew Volpe, Sanford J. Silverman, Yifan Xu, Bryson D. Bennett, Joshua D. Rabinowitz, David Botstein
Mol Biol Cell. 2018 Apr 15; 29(8): 897–910. doi: 10.1091/mbc.E17-11-0666
PMCID:
PMC5896929
AbstractArticlePDF–3.6M

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