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Select item 116180731.

Nucleosome flipping drives kinetic proofreading and processivity by SWR1

Paul Girvan, Adam S. B. Jalal, Elizabeth A. McCormack, Michael T. Skehan, Carol L. Knight, Dale B. Wigley, David S. Rueda

Nature. 2024; 636(8041): 251–257. Published online 2024 Nov 6. doi: 10.1038/s41586-024-08152-y

PMCID:: PMC11618073

Abstract Article PDF–21M

Select item 114149812.

Histone variant H2A.Z is needed for efficient transcription-coupled NER and genome integrity in UV challenged yeast cells

Hélène Gaillard, Toni Ciudad, Andrés Aguilera, Ralf E. Wellinger

PLoS Genet. 2024 Sep; 20(9): e1011300. Published online 2024 Sep 10. doi: 10.1371/journal.pgen.1011300

PMCID:: PMC11414981

Abstract Article PDF–2.9M

Select item 108724773.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105517005.

Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability

Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai

Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108

PMCID:: PMC10551700

Abstract Article PDF–3.7M

Select item 102333686.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 99305287.

SWR1 chromatin remodeling complex prevents mitotic slippage during spindle position checkpoint arrest

Ayse Koca Caydasi, Anton Khmelinskii, Zoulfia Darieva, Bahtiyar Kurtulmus, Michael Knop, Gislene Pereira

Mol Biol Cell. 2023 Feb 1; 34(2): ar11. Published online 2023 Jan 13. doi: 10.1091/mbc.E20-03-0179

PMCID:: PMC9930528

Abstract Article PDF–8.4M

Select item 98363488.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 97449099.

Functional crosstalk between the cohesin loader and chromatin remodelers

Sofía Muñoz, Andrew Jones, Céline Bouchoux, Tegan Gilmore, Harshil Patel, Frank Uhlmann

Nat Commun. 2022; 13: 7698. Published online 2022 Dec 13. doi: 10.1038/s41467-022-35444-6

PMCID:: PMC9744909

Abstract Article PDF–3.2M

Select item 947892810.

Transcriptional regulator Taf14 binds DNA and is required for the function of transcription factor TFIID in the absence of histone H2A.Z

Kadri Peil, Signe Värv, Ivar Ilves, Kersti Kristjuhan, Henel Jürgens, Arnold Kristjuhan

J Biol Chem. 2022 Sep; 298(9): 102369. Published online 2022 Aug 13. doi: 10.1016/j.jbc.2022.102369

PMCID:: PMC9478928

Abstract Article PDF–1.0M

Select item 936539111.

ATP binding facilitates target search of SWR1 chromatin remodeler by promoting one-dimensional diffusion on DNA

Claudia C Carcamo, Matthew F Poyton, Anand Ranjan, Giho Park, Robert K Louder, Xinyu A Feng, Jee Min Kim, Thuc Dzu, Carl Wu, Taekjip Ha

eLife. 2022; 11: e77352. Published online 2022 Jul 25. doi: 10.7554/eLife.77352

PMCID:: PMC9365391

Abstract Article PDF–9.0M

Select item 920981112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 867592613.

What makes a histone variant a variant: Changing H2A to become H2A.Z

Hilary T. Brewis, Alice Y. Wang, Aline Gaub, Justine J. Lau, Peter C. Stirling, Michael S. Kobor

PLoS Genet. 2021 Dec; 17(12): e1009950. Published online 2021 Dec 6. doi: 10.1371/journal.pgen.1009950

PMCID:: PMC8675926

Abstract Article PDF–3.6M

Select item 857691714.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 857106315.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6