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Items: 1 to 20 of 48

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The N1 domain of the peroxisomal AAA-ATPase Pex6 is required for Pex15 binding and proper assembly with Pex1
Bashir A. Ali, Ryan M. Judy, Saikat Chowdhury, Nicole K. Jacobsen, Dominic T. Castanzo, Kaili L. Carr, Chris D. Richardson, Gabriel C. Lander, Andreas Martin, Brooke M. Gardner
J Biol Chem. 2024 Jan; 300(1): 105504. Published online 2023 Nov 29. doi: 10.1016/j.jbc.2023.105504
PMCID:
PMC10777020
AbstractArticlePDF–3.5M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
Structure of the peroxisomal Pex1/Pex6 ATPase complex bound to a substrate
Maximilian Rüttermann, Michelle Koci, Pascal Lill, Ermis Dionysios Geladas, Farnusch Kaschani, Björn Udo Klink, Ralf Erdmann, Christos Gatsogiannis
Nat Commun. 2023; 14: 5942. Published online 2023 Sep 23. doi: 10.1038/s41467-023-41640-9
PMCID:
PMC10518020
AbstractArticlePDF–8.7M
5.
Spindle Position Checkpoint Kinase Kin4 Regulates Organelle Transport in Saccharomyces cerevisiae
Lakhan Ekal, Abdulaziz M. S. Alqahtani, Maya Schuldiner, Einat Zalckvar, Ewald H. Hettema, Kathryn R. Ayscough
Biomolecules. 2023 Jul; 13(7): 1098. Published online 2023 Jul 10. doi: 10.3390/biom13071098
PMCID:
PMC10377308
AbstractArticlePDF–5.7M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
The peroxisomal exportomer directly inhibits phosphoactivation of the pexophagy receptor Atg36 to suppress pexophagy in yeast
Houqing Yu, Roarke A Kamber, Vladimir Denic
eLife. 2022; 11: e74531. Published online 2022 Apr 11. doi: 10.7554/eLife.74531
PMCID:
PMC9000956
AbstractArticlePDF–1.0M
8.
Membrane Processing and Steady-State Regulation of the Alternative Peroxisomal Import Receptor Pex9p
Markus Rudowitz, Ralf Erdmann, Wolfgang Schliebs
Front Cell Dev Biol. 2020; 8: 566321. Published online 2020 Oct 22. doi: 10.3389/fcell.2020.566321
PMCID:
PMC7642143
AbstractArticlePDF–9.9M
9.
Saccharomyces cerevisiae cells lacking Pex3 contain membrane vesicles that harbor a subset of peroxisomal membrane proteins
Justyna P. Wroblewska, Luis Daniel Cruz-Zaragoza, Yuan Wei, Andreas Schummer, Silvia G. Chuartzman, Rinse de Boer, Silke Oeljeklaus, Maya Schuldiner, Einat Zalckvar, Bettina Warscheid, Ralf Erdmann, Ida J. van der Klei
Biochim Biophys Acta Mol Cell Res. Author manuscript; available in PMC 2021 Jul 31.
Published in final edited form as: Biochim Biophys Acta Mol Cell Res. 2017 Oct 1; 1864(10): 1656–1667. Published online 2017 May 26. doi: 10.1016/j.bbamcr.2017.05.021
PMCID:
PMC7611440
AbstractArticlePDF–2.3M
10.
Receptor recognition by the peroxisomal AAA complex depends on the presence of the ubiquitin moiety and is mediated by Pex1p
Daniel Schwerter, Immanuel Grimm, Wolfgang Girzalsky, Ralf Erdmann
J Biol Chem. 2018 Oct 5; 293(40): 15458–15470. Published online 2018 Aug 10. doi: 10.1074/jbc.RA118.003936
PMCID:
PMC6177594
AbstractArticlePDF–2.5M
11.
Genome-wide SWAp-tag yeast libraries for proteome exploration
Uri Weill, Ido Yofe, Ehud Sass, Bram Stynen, Dan Davidi, Janani Natarajan, Reut Ben Menachem, Zohar Avihou, Omer Goldman, Nofar Harpaz, Silvia Chuartzman, Kiril Kniazev, Barbara Knoblach, Janina Laborenz, Felix Boos, Jacqueline Kowarzyk, Shifra Ben-Dor, Einat Zalckvar, Johannes M. Herrmann, Richard A. Rachubinski, Ophry Pines, Doron Rapaport, Stephen W. Michnick, Emmanuel D. Levy, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2019 Jan 9.
Published in final edited form as: Nat Methods. 2018 Aug; 15(8): 617–622. Published online 2018 Jul 9. doi: 10.1038/s41592-018-0044-9
Correction in:
Nat Methods. 2019 Jan 2
PMCID:
PMC6076999
AbstractArticlePDF–1.7M
12.
The peroxisomal AAA-ATPase Pex1/Pex6 unfolds substrates by processive threading
Brooke M. Gardner, Dominic T. Castanzo, Saikat Chowdhury, Goran Stjepanovic, Matthew S. Stefely, James H. Hurley, Gabriel C. Lander, Andreas Martin
Nat Commun. 2018; 9: 135. Published online 2018 Jan 10. doi: 10.1038/s41467-017-02474-4
PMCID:
PMC5762779
AbstractArticlePDF–2.8M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
15.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
16.
Deficiency of the exportomer components Pex1, Pex6, and Pex15 causes enhanced pexophagy in Saccharomyces cerevisiae
James M Nuttall, Alison M Motley, Ewald H Hettema
Autophagy. 2014 May; 10(5): 835–845. Published online 2014 Mar 18. doi: 10.4161/auto.28259
PMCID:
PMC5119063
AbstractArticlePDF–2.1M
17.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
18.
Identification of Yeast Mutants Exhibiting Altered Sensitivity to Valinomycin and Nigericin Demonstrate Pleiotropic Effects of Ionophores on Cellular Processes
Michaela Jakubkova, Vladimira Dzugasova, Dominika Truban, Lenka Abelovska, Ingrid Bhatia-Kissova, Martin Valachovic, Vlasta Klobucnikova, Lucia Zeiselova, Peter Griac, Jozef Nosek, Lubomir Tomaska
PLoS One. 2016; 11(10): e0164175. Published online 2016 Oct 6. doi: 10.1371/journal.pone.0164175
PMCID:
PMC5053447
AbstractArticlePDF–3.1M
19.
Nucleotide-dependent assembly of the peroxisomal receptor export complex
Immanuel Grimm, Delia Saffian, Wolfgang Girzalsky, Ralf Erdmann
Sci Rep. 2016; 6: 19838. Published online 2016 Feb 4. doi: 10.1038/srep19838
PMCID:
PMC4740771
AbstractArticlePDF–1.3M
20.
Yeast pex1 cells contain peroxisomal ghosts that import matrix proteins upon reintroduction of Pex1
Kèvin Knoops, Rinse de Boer, Anita Kram, Ida J. van der Klei
J Cell Biol. 2015 Dec 7; 211(5): 955–962. doi: 10.1083/jcb.201506059
PMCID:
PMC4674281
AbstractArticlePDF–2.1M

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