PMC Links for GEO Profiles (Select 28011179) - PMC

Select item 96038601.

The Deubiquitinating Enzyme USP48 Interacts with the Retinal Degeneration-Associated Proteins UNC119a and ARL3

Laura Sánchez-Bellver, Andrea Férriz-Gordillo, Marc Carrillo-Pz, Laura Rabanal, Francesc R. Garcia-Gonzalo, Gemma Marfany

Int J Mol Sci. 2022 Oct; 23(20): 12527. Published online 2022 Oct 19. doi: 10.3390/ijms232012527

PMCID:: PMC9603860

Abstract Article PDF–3.4M

Select item 79387702.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 78384183.

Absence of S100A4 in the mouse lens induces an aberrant retina-specific differentiation program and cataract

Rupalatha Maddala, Junyuan Gao, Richard T. Mathias, Tylor R. Lewis, Vadim Y. Arshavsky, Adriana Levine, Jonathan M. Backer, Anne R. Bresnick, Ponugoti V. Rao

Sci Rep. 2021; 11: 2203. Published online 2021 Jan 26. doi: 10.1038/s41598-021-81611-y

PMCID:: PMC7838418

Abstract Article PDF–6.5M

Select item 70606704.

Foxn4 is a temporal identity factor conferring mid/late-early retinal competence and involved in retinal synaptogenesis

Shuting Liu, Xiaoning Liu, Shengguo Li, Xiuting Huang, Haohua Qian, Kangxin Jin, Mengqing Xiang

Proc Natl Acad Sci U S A. 2020 Mar 3; 117(9): 5016–5027. Published online 2020 Feb 18. doi: 10.1073/pnas.1918628117

PMCID:: PMC7060670

Abstract Article PDF–4.2M

Select item 59720755.

The role of the Rx homeobox gene in retinal progenitor proliferation and cell fate specification

HM Rodgers, VJ Huffman, VA Voronina, M Lewandoski, PH Mathers

Mech Dev. Author manuscript; available in PMC 2019 Jun 1.

Published in final edited form as: Mech Dev. 2018 Jun; 151: 18–29. Published online 2018 Apr 14. doi: 10.1016/j.mod.2018.04.003

PMCID:: PMC5972075

Abstract Article PDF–2.5M

Select item 41918026.

Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development

Darshan Sapkota, Hemabindu Chintala, Fuguo Wu, Steven J. Fliesler, Zihua Hu, Xiuqian Mu

Proc Natl Acad Sci U S A. 2014 Sep 30; 111(39): E4086–E4095. Published online 2014 Sep 16. doi: 10.1073/pnas.1405354111

PMCID:: PMC4191802

Abstract Article PDF–3.6M

Select item 38698377.

Absence of Synaptic Regulation by Phosducin in Retinal Slices

James H. Long, Vadim Y. Arshavsky, Marie E. Burns

PLoS One. 2013; 8(12): e83970. Published online 2013 Dec 20. doi: 10.1371/journal.pone.0083970

PMCID:: PMC3869837

Abstract Article PDF–647K

Select item 35724108.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 33823809.

Phosphorylation of Phosducin Accelerates Rod Recovery from Transducin Translocation

Marycharmain Belcastro, Hongman Song, Satyabrata Sinha, Chunyan Song, Peter H Mathers, Maxim Sokolov

Invest Ophthalmol Vis Sci. 2012 May; 53(6): 3084–3091. Published online 2012 May 21. doi: 10.1167/iovs.11-8798

PMCID:: PMC3382380

Abstract Article PDF–645K

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253411.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 292798512.

Phosducin Regulates Transmission at thePhotoreceptor-to-ON-Bipolar Cell Synapse

Rolf Herrmann, Ekaterina S. Lobanova, Timothy Hammond, Christopher Kessler, Marie E. Burns, Laura J. Frishman, Vadim Y. Arshavsky

J Neurosci. 2010 Mar 3; 30(9): 3239–3253. doi: 10.1523/JNEUROSCI.4775-09.2010

PMCID:: PMC2927985

Abstract Article PDF–8.2M

Select item 279535013.

Transducin γ-Subunit Sets Expression Levels of α- and β-Subunits and Is Crucial for Rod Viability

Ekaterina S. Lobanova, Stella Finkelstein, Rolf Herrmann, Yen-Ming Chen, Christopher Kessler, Norman A. Michaud, Lynn H. Trieu, Katherine J. Strissel, Marie E. Burns, Vadim Y. Arshavsky

J Neurosci. 2008 Mar 26; 28(13): 3510–3520. doi: 10.1523/JNEUROSCI.0338-08.2008

PMCID:: PMC2795350

Abstract Article PDF–721K

Select item 278678914.

Phosducin influences sympathetic activity and prevents stress-induced hypertension in humans and mice

Nadine Beetz, Michael D. Harrison, Marc Brede, Xiangang Zong, Michal J. Urbanski, Anika Sietmann, Jennifer Kaufling, Michel Barrot, Mathias W. Seeliger, Maria Augusta Vieira-Coelho, Pavel Hamet, Daniel Gaudet, Ondrej Seda, Johanne Tremblay, Theodore A. Kotchen, Mary Kaldunski, Rolf Nüsing, Bela Szabo, Howard J. Jacob, Allen W. Cowley, Jr., Martin Biel, Monika Stoll, Martin J. Lohse, Ulrich Broeckel, Lutz Hein

J Clin Invest. 2009 Dec 1; 119(12): 3597–3612. Published online 2009 Nov 23. doi: 10.1172/JCI38433

Correction in:: J Clin Invest. 2011 Jan 4; 121(1): 454.

PMCID:: PMC2786789

Abstract Article PDF–3.0M

Select item 244070115.

DOPAMINE MODULATES DIURNAL AND CIRCADIAN RHYTHMS OF PROTEIN PHOSPHORYLATION IN PHOTORECEPTOR CELLS OF MOUSE RETINA

Nikita Pozdeyev, Gianluca Tosini, Li Li, Fatima Ali, Stanislav Rozov, Rehwa H. Lee, P. Michael Iuvone

Eur J Neurosci. Author manuscript; available in PMC 2009 Jan 1.

Published in final edited form as: Eur J Neurosci. 2008; 27: 2691–2700. doi: 10.1111/j.1460-9568.2008.06224.x

PMCID:: PMC2440701

Abstract Article PDF–1.9M

Select item 215164316.

Phosducin Regulates the Expression of Transducin βγ Subunits in Rod Photoreceptors and Does Not Contribute to Phototransduction Adaptation

Claudia M. Krispel, Maxim Sokolov, Yen-Ming Chen, Hongman Song, Rolf Herrmann, Vadim Y. Arshavsky, Marie E. Burns

J Gen Physiol. 2007 Sep; 130(3): 303–312. doi: 10.1085/jgp.200709812

PMCID:: PMC2151643

Abstract Article PDF–1.3M

Select item 52892817.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 31099218.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098019.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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