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Items: 1 to 20 of 24

1.
Fatty acid chain length drives lysophosphatidylserine dependent immunological outputs
Neha Khandelwal, Minhaj Shaikh, Amol Mhetre, Shubham Singh, Theja Sajeevan, Alaumy Joshi, Kithiganahalli Narayanswamy Balaji, Harinath Chakrapani, Siddhesh S. Kamat
Cell Chem Biol. Author manuscript; available in PMC 2022 Feb 19.
Published in final edited form as: Cell Chem Biol. 2021 Aug 19; 28(8): 1169–1179.e6. Published online 2021 Feb 10. doi: 10.1016/j.chembiol.2021.01.008
PMCID:
PMC7611549
AbstractArticlePDF–2.4M
2.
BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING)
Kou Motani, Hidetaka Kosako
J Biol Chem. 2020 Aug 7; 295(32): 11174–11183. Published online 2020 Jun 17. doi: 10.1074/jbc.RA120.014323
PMCID:
PMC7415991
AbstractArticlePDF–2.0M
3.
ABHD12 and LPCAT3 interplay regulates a lyso-phosphatidylserine-C20:4 phosphatidylserine lipid network implicated in neurological disease
Taka-Aki Ichu, Alex Reed, Daisuke Ogasawara, Olesya Ulanovskaya, Amanda Roberts, Carlos A. Aguirre, Liron Bar-Peled, Jie Gao, Jason Germain, Sabrina Barbas, Kim Masuda, Bruno Conti, Peter Tontonoz, Benjamin F. Cravatt
Biochemistry. Author manuscript; available in PMC 2021 May 19.
Published in final edited form as: Biochemistry. 2020 May 19; 59(19): 1793–1799. Published online 2020 May 4. doi: 10.1021/acs.biochem.0c00292
PMCID:
PMC7394188
AbstractArticlePDF–1.2M
4.
Mapping the neuroanatomy of ABHD16A–ABHD12 & lysophosphatidylserines provides new insights into the pathophysiology of the human neurological disorder PHARC
Shubham Singh, Alaumy Joshi, Siddhesh S. Kamat
Biochemistry. Author manuscript; available in PMC 2020 Dec 23.
Published in final edited form as: Biochemistry. 2020 May 28; 59(24): 2299–2311. Published online 2020 May 28. doi: 10.1021/acs.biochem.0c00349
PMCID:
PMC7311203
AbstractArticlePDF–3.8M
5.
Elevated Levels of Arachidonic Acid-Derived Lipids Including Prostaglandins and Endocannabinoids Are Present Throughout ABHD12 Knockout Brains: Novel Insights Into the Neurodegenerative Phenotype
Emma Leishman, Ken Mackie, Heather B. Bradshaw
Front Mol Neurosci. 2019; 12: 142. Published online 2019 May 31. doi: 10.3389/fnmol.2019.00142
PMCID:
PMC6555221
AbstractArticlePDF–5.0M
6.
A Chemical Genetic Screen Identifies ABHD12 as an Oxidized Phosphatidylserine Lipase
Dhanashree S. Kelkar, Govindan Ravikumar, Neelay Mehendale, Shubham Singh, Alaumy Joshi, Ajay Kumar Sharma, Amol Mhetre, Abinaya Rajendran, Harinath Chakrapani, Siddhesh S. Kamat
Nat Chem Biol. Author manuscript; available in PMC 2019 Jul 14.
Published in final edited form as: Nat Chem Biol. 2019 Feb; 15(2): 169–178. Published online 2019 Jan 14. doi: 10.1038/s41589-018-0195-0
PMCID:
PMC6420073
AbstractArticlePDF–1.9M
7.
Biochemical characterization of the PHARC-associated serine hydrolase ABHD12 reveals its preference for very-long-chain lipids
Alaumy Joshi, Minhaj Shaikh, Shubham Singh, Abinaya Rajendran, Amol Mhetre, Siddhesh S. Kamat
J Biol Chem. 2018 Nov 2; 293(44): 16953–16963. Published online 2018 Sep 20. doi: 10.1074/jbc.RA118.005640
PMCID:
PMC6217928
AbstractArticlePDF–1.5M
8.
Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function
Tingting Zhang, Wei Du, Andrew F. Wilson, Satoshi H. Namekawa, Paul R. Andreassen, Amom Ruhikanta Meetei, Qishen Pang
Sci Rep. 2017; 7: 45626. Published online 2017 Apr 5. doi: 10.1038/srep45626
PMCID:
PMC5381226
AbstractArticlePDF–1.4M
9.
Identification of PSD-95 Depalmitoylating Enzymes
Norihiko Yokoi, Yuko Fukata, Atsushi Sekiya, Tatsuro Murakami, Kenta Kobayashi, Masaki Fukata
J Neurosci. 2016 Jun 15; 36(24): 6431–6444. doi: 10.1523/JNEUROSCI.0419-16.2016
PMCID:
PMC5015780
AbstractArticlePDF–4.4M
10.
A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation
Andreu Viader, Daisuke Ogasawara, Christopher M Joslyn, Manuel Sanchez-Alavez, Simone Mori, William Nguyen, Bruno Conti, Benjamin F Cravatt
eLife. 2016; 5: e12345. Published online 2016 Jan 18. doi: 10.7554/eLife.12345
PMCID:
PMC4737654
AbstractArticlePDF–3.5M
11.
Constraint and divergence of global gene expression in the mammalian embryo
Noah Spies, Cheryl L Smith, Jesse M Rodriguez, Julie C Baker, Serafim Batzoglou, Arend Sidow
eLife. 2015; 4: e05538. Published online 2015 Apr 14. doi: 10.7554/eLife.05538
PMCID:
PMC4417935
AbstractArticlePDF–2.0M
12.
Immunomodulatory lysophosphatidylserines are regulated by ABHD16A and ABHD12 interplay
Siddhesh S. Kamat, Kaddy Camara, William H. Parsons, Dong-Hui Chen, Melissa M. Dix, Thomas D. Bird, Amy R. Howell, Benjamin F. Cravatt
Nat Chem Biol. Author manuscript; available in PMC 2015 Aug 1.
Published in final edited form as: Nat Chem Biol. 2015 Feb; 11(2): 164–171. Published online 2015 Jan 12. doi: 10.1038/nchembio.1721
PMCID:
PMC4301979
ArticlePDF–1.2M
13.
ABHD12 controls brain lysophosphatidylserine pathways that are deregulated in a murine model of the neurodegenerative disease PHARC
Jacqueline L. Blankman, Jonathan Z. Long, Sunia A. Trauger, Gary Siuzdak, Benjamin F. Cravatt
Proc Natl Acad Sci U S A. 2013 Jan 22; 110(4): 1500–1505. Published online 2013 Jan 7. doi: 10.1073/pnas.1217121110
PMCID:
PMC3557017
AbstractArticlePDF–876K
14.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
15.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
16.
Mutations in ABHD12 Cause the Neurodegenerative Disease PHARC: An Inborn Error of Endocannabinoid Metabolism
Torunn Fiskerstrand, Dorra H'mida-Ben Brahim, Stefan Johansson, Abderrahim M'zahem, Bjørn Ivar Haukanes, Nathalie Drouot, Julian Zimmermann, Andrew J. Cole, Christian Vedeler, Cecilie Bredrup, Mirna Assoum, Meriem Tazir, Thomas Klockgether, Abdelmadjid Hamri, Vidar M. Steen, Helge Boman, Laurence A. Bindoff, Michel Koenig, Per M. Knappskog
Am J Hum Genet. 2010 Sep 10; 87(3): 410–417. doi: 10.1016/j.ajhg.2010.08.002
PMCID:
PMC2933347
AbstractArticlePDF–322K
17.
A Comprehensive Profile of Brain Enzymes that Hydrolyze the Endocannabinoid 2-Arachidonoylglycerol
Jacqueline L. Blankman, Gabriel M. Simon, Benjamin F. Cravatt
Chem Biol. Author manuscript; available in PMC 2009 Jun 8.
Published in final edited form as: Chem Biol. 2007 Dec; 14(12): 1347–1356. doi: 10.1016/j.chembiol.2007.11.006
PMCID:
PMC2692834
AbstractArticlePDF–1.0M
18.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
19.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
20.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M

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