PMC Links for GEO Profiles (Select 28439609) - PMC

Select item 105294241.

Histone demethylase KDM5D upregulation drives sex differences in colon cancer

Jiexi Li, Zhengdao Lan, Wenting Liao, James W. Horner, Xueping Xu, Jielin Liu, Yohei Yoshihama, Shan Jiang, Hong Seok Shim, Max Slotnik, Kyle A. LaBella, Chang-Jiun Wu, Kenneth Dunner, Jr., Wen-Hao Hsu, Rumi Lee, Isha Khanduri, Christopher Terranova, Kadir Akdemir, Deepavali Chakravarti, Xiaoying Shang, Denise J. Spring, Y. Alan Wang, Ronald A. DePinho

Nature. Author manuscript; available in PMC 2023 Sep 27.

Published in final edited form as: Nature. 2023 Jul; 619(7970): 632–639. Published online 2023 Jun 21. doi: 10.1038/s41586-023-06254-7

PMCID:: PMC10529424

Abstract Article PDF–6.1M

Select item 83338712.

Identification of Jmjd3 as an Essential Epigenetic Regulator of Hox Gene Temporal Collinear Activation for Body Axial Patterning in Mice

Feng Zhang, Xiong Zhao, Runmin Jiang, Yuying Wang, Xinli Wang, Yu Gu, Longyong Xu, Jing Ye, Charlie Degui Chen, Shuangping Guo, Dawei Zhang, Daqing Zhao

Front Cell Dev Biol. 2021; 9: 642931. Published online 2021 Jul 21. doi: 10.3389/fcell.2021.642931

PMCID:: PMC8333871

Abstract Article PDF–1.4M

Select item 83132393.

Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development

Francesco Bedogni, Robert F. Hevner

Front Mol Neurosci. 2021; 14: 686034. Published online 2021 Jul 12. doi: 10.3389/fnmol.2021.686034

PMCID:: PMC8313239

Abstract Article PDF–1.6M

Select item 79387704.

BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili

Cell Syst. Author manuscript; available in PMC 2021 Apr 22.

Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003

Correction in:: Cell Syst. 2020 Aug 26; 11(2): 208.

PMCID:: PMC7938770

Abstract Article PDF–2.0M

Select item 67359605.

CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched genes dispensable for male fertility in mice

Yonggang Lu, Seiya Oura, Takafumi Matsumura, Asami Oji, Nobuyuki Sakurai, Yoshitaka Fujihara, Keisuke Shimada, Haruhiko Miyata, Tomohiro Tobita, Taichi Noda, Julio M Castaneda, Daiji Kiyozumi, Qian Zhang, Tamara Larasati, Samantha A M Young, Mayo Kodani, Caitlin A Huddleston, Matthew J Robertson, Cristian Coarfa, Ayako Isotani, R John Aitken, Masaru Okabe, Martin M Matzuk, Thomas X Garcia, Masahito Ikawa

Biol Reprod. 2019 Aug; 101(2): 501–511. Published online 2019 Jun 14. doi: 10.1093/biolre/ioz103

PMCID:: PMC6735960

Abstract Article PDF–6.9M

Select item 37393656.

The role of Dby mRNA in early development of male mouse zygotes

Chen-Jiang Yao, Wang-Jie Xu, Xiu-Li Gong, Ying Zhou, Zhi-Qiang Yan, Zi-Jue Zhu, Zhao-Xia Wang, Qiao-Li Li, Xin-Bin Guo, Lian-Yun Wang, Duan Ma, Zhong-Dong Qiao

Asian J Androl. 2010 Jul; 12(4): 567–577. Published online 2010 Jun 14. doi: 10.1038/aja.2010.28

PMCID:: PMC3739365

Abstract Article PDF–737K

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 28362678.

An atlas of combinatorial transcriptional regulation in mouse and man

The FANTOM consortium and RIKEN Omics Science Center

Cell. Author manuscript; available in PMC 2011 Mar 5.

Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044

Correction in:: volume 141 on page 369

PMCID:: PMC2836267

Abstract Article PDF–2.2M

Select item 26054799.

Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives

Owen J Tamplin, Doris Kinzel, Brian J Cox, Christine E Bell, Janet Rossant, Heiko Lickert

BMC Genomics. 2008; 9: 511. Published online 2008 Oct 30. doi: 10.1186/1471-2164-9-511

PMCID:: PMC2605479

Abstract Article PDF–1.7M

Select item 244033710.

Characterization of the mid-foregut transcriptome identifies genes regulated during lung bud induction

Guetchyn Millien, Jennifer Beane, Marc Lenburg, Po-Nien Tsao, Jining Lu, Avrum Spira, Maria I. Ramirez.

Gene Expr Patterns. Author manuscript; available in PMC 2008 Jun 26.

Published in final edited form as: Gene Expr Patterns. 2008 Jan; 8(2): 124–139. Published online 2007 Sep 26. doi: 10.1016/j.modgep.2007.09.003

PMCID:: PMC2440337

Abstract Article PDF–2.4M

Select item 32710111.

Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome

Sara A. Sandstedt, Priscilla K. Tucker

Genome Res. 2004 Feb; 14(2): 267–272. doi: 10.1101/gr.1796204

PMCID:: PMC327101

Abstract Article PDF–142K

Select item 31099212.

RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer

Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki

Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600

PMCID:: PMC310992

Abstract Article PDF–3.4M

Select item 31098013.

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki

Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100

PMCID:: PMC310980

Abstract Article PDF–1.4M

Select item 13924114.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 4080515.

Y chromosome short arm-Sxr recombination in XSxr/Y males causes deletion of Rbm and XY female sex reversal.

S H Laval, P H Glenister, C Rasberry, C E Thornton, S K Mahadevaiah, H J Cooke, P S Burgoyne, B M Cattanach

Proc Natl Acad Sci U S A. 1995 Oct 24; 92(22): 10403–10407. doi: 10.1073/pnas.92.22.10403

PMCID:: PMC40805

Summary Page Browse PDF–1.4M

Select item 1969516.

Long-term T cell memory requires the surface expression of self-peptide/major histocompatibility complex molecules

Mary A. Markiewicz, Cristina Girao, Joseph T. Opferman, Jiling Sun, Qinghui Hu, Alexander A. Agulnik, Colin E. Bishop, Craig B. Thompson, Philip G. Ashton-Rickardt

Proc Natl Acad Sci U S A. 1998 Mar 17; 95(6): 3065–3070. doi: 10.1073/pnas.95.6.3065

PMCID:: PMC19695

Abstract Article PDF–200K

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