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Items: 1 to 20 of 46

1.
A modERN resource: identification of Drosophila transcription factor candidate target genes using RNAi
William W Fisher, Ann S Hammonds, Richard Weiszmann, Benjamin W Booth, Louis Gevirtzman, Jaeda E J Patton, Connor A Kubo, Robert H Waterston, Susan E Celniker
Genetics. 2023 Apr; 223(4): iyad004. Published online 2023 Jan 19. doi: 10.1093/genetics/iyad004
PMCID:
PMC10078917
AbstractArticlePDF–18M
2.
Modulation of protease expression by the transcription factor Ptx1/PITX regulates protein quality control during aging
Jianqin Jiao, Michelle Curley, Flavia A. Graca, Maricela Robles-Murguia, Abbas Shirinifard, David Finkelstein, Beisi Xu, Yiping Fan, Fabio Demontis
Cell Rep. Author manuscript; available in PMC 2023 Feb 16.
Published in final edited form as: Cell Rep. 2023 Jan 31; 42(1): 111970. Published online 2023 Jan 10. doi: 10.1016/j.celrep.2022.111970
PMCID:
PMC9933915
AbstractArticlePDF–2.5M
3.
Fitness Analysis and Transcriptome Profiling Following Repeated Mild Heat Stress of Varying Frequency in Drosophilamelanogaster Females
Nataly E. Gruntenko, Evgenia K. Karpova, Vladimir N. Babenko, Gennady V. Vasiliev, Olga V. Andreenkova, Margarita A. Bobrovskikh, Petr N. Menshanov, Roman O. Babenko, Inga Yu. Rauschenbach
Biology (Basel) 2021 Dec; 10(12): 1323. Published online 2021 Dec 14. doi: 10.3390/biology10121323
PMCID:
PMC8698867
AbstractArticlePDF–3.8M
4.
Multiscale analysis reveals that diet-dependent midgut plasticity emerges from alterations in both stem cell niche coupling and enterocyte size
Alessandro Bonfini, Adam J Dobson, David Duneau, Jonathan Revah, Xi Liu, Philip Houtz, Nicolas Buchon
eLife. 2021; 10: e64125. Published online 2021 Sep 23. doi: 10.7554/eLife.64125
PMCID:
PMC8528489
AbstractArticlePDF–12M
5.
The Impact of Microbiome and Microbiota-Derived Sodium Butyrate on Drosophila Transcriptome and Metabolome Revealed by Multi-Omics Analysis
Fan Zhou, Biaodi Liu, Xin Liu, Yan Li, Luoluo Wang, Jia Huang, Guanzheng Luo, Xiaoyun Wang
Metabolites. 2021 May; 11(5): 298. Published online 2021 May 6. doi: 10.3390/metabo11050298
PMCID:
PMC8148185
AbstractArticlePDF–28M
6.
A SuperFamily-Wide Activity Atlas of Serine Hydrolases in Drosophila Melanogaster
Kundan Kumar, Amol Mhetre, Girish S. Ratnaparkhi, Siddhesh S. Kamat
Biochemistry. Author manuscript; available in PMC 2021 Oct 27.
Published in final edited form as: Biochemistry. 2021 Apr 27; 60(16): 1312–1324. Published online 2021 Apr 7. doi: 10.1021/acs.biochem.1c00171
PMCID:
PMC7610703
AbstractArticlePDF–1.7M
7.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
8.
Drosophila p53 directs nonapoptotic programs in postmitotic tissue
Paula Kurtz, Amanda E. Jones, Bhavana Tiwari, Nichole Link, Annika Wylie, Charles Tracy, Helmut Krämer, John M. Abrams
Mol Biol Cell. 2019 May 15; 30(11): 1339–1351. doi: 10.1091/mbc.E18-12-0791
PMCID:
PMC6724604
AbstractArticlePDF–1.2M
9.
The gut microbiome participates in transgenerational inheritance of low‐temperature responses in Drosophila melanogaster
Aman Zare, Anna‐Mia Johansson, Edvin Karlsson, Nicolas Delhomme, Per Stenberg
FEBS Lett. 2018 Dec; 592(24): 4078–4086. Published online 2018 Nov 15. doi: 10.1002/1873-3468.13278
PMCID:
PMC6587461
AbstractArticlePDF–479K
10.
Building a platform for predicting functions of serine protease-related proteins in Drosophila melanogaster and other insects
Xiaolong Cao, Haobo Jiang
Insect Biochem Mol Biol. Author manuscript; available in PMC 2019 Dec 1.
Published in final edited form as: Insect Biochem Mol Biol. 2018 Dec; 103: 53–69. Published online 2018 Oct 24. doi: 10.1016/j.ibmb.2018.10.006
PMCID:
PMC6358214
AbstractArticlePDF–6.9M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
Drosophila melanogaster positive transcriptional elongation factors regulate metabolic and sex-biased expression in adults
Haiwang Yang, Denis Basquin, Daniel Pauli, Brian Oliver
BMC Genomics. 2017; 18: 384. Published online 2017 May 18. doi: 10.1186/s12864-017-3755-x
PMCID:
PMC5436443
AbstractArticlePDF–2.2M
14.
Mitochondrial-Nuclear Interactions Mediate Sex-Specific Transcriptional Profiles in Drosophila
Jim A. Mossman, Jennifer G. Tross, Nan Li, Zhijin Wu, David M. Rand
Genetics. 2016 Oct; 204(2): 613–630. Published online 2016 Aug 24. doi: 10.1534/genetics.116.192328
PMCID:
PMC5068850
AbstractArticlePDF–12M
15.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
16.
Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet
Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata
Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371
PMCID:
PMC4788116
AbstractArticlePDF–4.7M
17.
Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions
Albert J. Erives
Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1
PMCID:
PMC4568025
AbstractArticlePDF–2.8M
18.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
19.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
20.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K

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