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Items: 1 to 20 of 39

1.
Metabolic regulation of proteome stability via N-terminal acetylation controls male germline stem cell differentiation and reproduction
Charlotte M. François, Thomas Pihl, Marion Dunoyer de Segonzac, Chloé Hérault, Bruno Hudry
Nat Commun. 2023; 14: 6737. Published online 2023 Oct 23. doi: 10.1038/s41467-023-42496-9
PMCID:
PMC10593830
AbstractArticlePDF–3.0M
2.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
3.
The Green Valley of Drosophila melanogaster Constitutive Heterochromatin: Protein-Coding Genes Involved in Cell Division Control
Giovanni Messina, Yuri Prozzillo, Greta Bizzochi, Renè Massimiliano Marsano, Patrizio Dimitri
Cells. 2022 Oct; 11(19): 3058. Published online 2022 Sep 29. doi: 10.3390/cells11193058
PMCID:
PMC9563267
AbstractArticlePDF–1.2M
4.
In vivo analysis reveals that ATP-hydrolysis couples remodeling to SWI/SNF release from chromatin
Ben C Tilly, Gillian E Chalkley, Jan A van der Knaap, Yuri M Moshkin, Tsung Wai Kan, Dick HW Dekkers, Jeroen AA Demmers, C Peter Verrijzer
eLife. 2021; 10: e69424. Published online 2021 Jul 27. doi: 10.7554/eLife.69424
PMCID:
PMC8352592
AbstractArticlePDF–10M
5.
BICRA, a SWI/SNF Complex Member, Is Associated with BAF-Disorder Related Phenotypes in Humans and Model Organisms
Scott Barish, Tahsin Stefan Barakat, Brittany C. Michel, Nazar Mashtalir, Jennifer B. Phillips, Alfredo M. Valencia, Berrak Ugur, Jeremy Wegner, Tiana M. Scott, Brett Bostwick, Undiagnosed Diseases Network, David R. Murdock, Hongzheng Dai, Elena Perenthaler, Anita Nikoncuk, Marjon van Slegtenhorst, Alice S. Brooks, Boris Keren, Caroline Nava, Cyril Mignot, Jessica Douglas, Lance Rodan, Catherine Nowak, Sian Ellard, Karen Stals, Sally Ann Lynch, Marie Faoucher, Gaetan Lesca, Patrick Edery, Kendra L. Engleman, Dihong Zhou, Isabelle Thiffault, John Herriges, Jennifer Gass, Raymond J. Louie, Elliot Stolerman, Camerun Washington, Francesco Vetrini, Aiko Otsubo, Victoria M. Pratt, Erin Conboy, Kayla Treat, Nora Shannon, Jose Camacho, Emma Wakeling, Bo Yuan, Chun-An Chen, Jill A. Rosenfeld, Monte Westerfield, Michael Wangler, Shinya Yamamoto, Cigall Kadoch, Daryl A. Scott, Hugo J. Bellen
Am J Hum Genet. 2020 Dec 3; 107(6): 1096–1112. Published online 2020 Nov 23. doi: 10.1016/j.ajhg.2020.11.003
PMCID:
PMC7820627
AbstractArticlePDF–2.8M
6.
Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins
Sergei Yu. Funikov, Alexander P. Rezvykh, Dina A. Kulikova, Elena S. Zelentsova, Lyudmila A. Protsenko, Lyubov N. Chuvakova, Venera I. Tyukmaeva, Irina R. Arkhipova, Michael B. Evgen’ev
Sci Rep. 2020; 10: 11893. Published online 2020 Jul 17. doi: 10.1038/s41598-020-68879-2
PMCID:
PMC7368049
AbstractArticlePDF–8.8M
7.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
8.
Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes
Nazar Mashtalir, Andrew R. D’Avino, Brittany C. Michel, Jie Luo, Joshua Pan, Jordan E. Otto, Hayley J. Zullow, Zachary M. McKenzie, Rachel L. Kubiak, Roodolph St. Pierre, Alfredo M. Valencia, Steven J. Poynter, Seth H. Cassel, Jeffrey A. Ranish, Cigall Kadoch
Cell. Author manuscript; available in PMC 2019 Nov 15.
Published in final edited form as: Cell. 2018 Nov 15; 175(5): 1272–1288.e20. Published online 2018 Oct 18. doi: 10.1016/j.cell.2018.09.032
PMCID:
PMC6791824
AbstractArticlePDF–1.7M
9.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
10.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
Comparative Genomic Analyses Provide New Insights into the Evolutionary Dynamics of Heterochromatin in Drosophila
Ruggiero Caizzi, Roberta Moschetti, Lucia Piacentini, Laura Fanti, Renè Massimiliano Marsano, Patrizio Dimitri
PLoS Genet. 2016 Aug; 12(8): e1006212. Published online 2016 Aug 11. doi: 10.1371/journal.pgen.1006212
PMCID:
PMC4981424
AbstractArticlePDF–6.5M
14.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
Plasma membrane overgrowth causes fibrotic collagen accumulation and immune activation in Drosophila adipocytes
Yiran Zang, Ming Wan, Min Liu, Hongmei Ke, Shuangchun Ma, Lu-Ping Liu, Jian-Quan Ni, José Carlos Pastor-Pareja
eLife. 2015; 4: e07187. Published online 2015 Jun 19. doi: 10.7554/eLife.07187
PMCID:
PMC4490375
AbstractArticlePDF–6.6M
18.
The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt
Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001
PMCID:
PMC4398050
AbstractArticlePDF–8.9M
19.
A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development
Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke
Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114
PMCID:
PMC4381523
AbstractArticlePDF–700K
20.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K

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