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Items: 1 to 20 of 35

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Glucose Starvation Induces a Switch in the Histone Acetylome for Activation of Gluconeogenic and Fat Metabolism Genes
Wen-Chuan Hsieh, Benjamin M. Sutter, Holly Ruess, Spencer D. Barnes, Venkat S. Malladi, Benjamin P. Tu
Mol Cell. Author manuscript; available in PMC 2023 Jan 6.
Published in final edited form as: Mol Cell. 2022 Jan 6; 82(1): 60–74.e5. doi: 10.1016/j.molcel.2021.12.015
PMCID:
PMC8794035
AbstractArticlePDF–2.9M
3.
Yeast DNA polymerase η possesses two PIP-like motifs that bind PCNA and Rad6-Rad18 with different specificities
Brittany M. Ripley, Devin T. Reusch, M. Todd Washington
DNA Repair (Amst) Author manuscript; available in PMC 2021 Nov 1.
Published in final edited form as: DNA Repair (Amst). 2020 Nov; 95: 102968. Published online 2020 Sep 6. doi: 10.1016/j.dnarep.2020.102968
PMCID:
PMC8240473
AbstractArticlePDF–869K
4.
Structure of the endocytic adaptor complex reveals the basis for efficient membrane anchoring during clathrin-mediated endocytosis
Javier Lizarrondo, David P. Klebl, Stephan Niebling, Marc Abella, Martin A. Schroer, Haydyn D. T. Mertens, Katharina Veith, Roland Thuenauer, Dmitri I. Svergun, Michal Skruzny, Frank Sobott, Stephen P. Muench, Maria M. Garcia-Alai
Nat Commun. 2021; 12: 2889. Published online 2021 May 17. doi: 10.1038/s41467-021-23151-7
PMCID:
PMC8129110
AbstractArticlePDF–4.9M
5.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
6.
Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion
David Bergenholm, Guodong Liu, Petter Holland, Jens Nielsen
mSystems. 2018 Jul-Aug; 3(4): e00215-17. Published online 2018 Jul 31. doi: 10.1128/mSystems.00215-17
PMCID:
PMC6068829
AbstractArticlePDF–2.7M
7.
Epsin and Sla2 form assemblies through phospholipid interfaces
Maria M. Garcia-Alai, Johannes Heidemann, Michal Skruzny, Anna Gieras, Haydyn D. T. Mertens, Dmitri I. Svergun, Marko Kaksonen, Charlotte Uetrecht, Rob Meijers
Nat Commun. 2018; 9: 328. Published online 2018 Jan 23. doi: 10.1038/s41467-017-02443-x
PMCID:
PMC5780493
AbstractArticlePDF–2.9M
8.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
11.
Interrogation of γ-tubulin alleles using high-resolution fitness measurements reveals a distinct cytoplasmic function in spindle alignment
Kristian Shulist, Eric Yen, Susanne Kaitna, Allen Leary, Alexandra Decterov, Debarun Gupta, Jackie Vogel
Sci Rep. 2017; 7: 11398. Published online 2017 Sep 12. doi: 10.1038/s41598-017-11789-7
Correction in:
Sci Rep. 2018; 8: 2513.
PMCID:
PMC5595808
AbstractArticlePDF–5.9M
12.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
13.
Meiotic Interactors of a Mitotic Gene TAO3 Revealed by Functional Analysis of its Rare Variant
Saumya Gupta, Aparna Radhakrishnan, Rachana Nitin, Pandu Raharja-Liu, Gen Lin, Lars M. Steinmetz, Julien Gagneur, Himanshu Sinha
G3 (Bethesda) 2016 Aug; 6(8): 2255–2263. Published online 2016 Jun 14. doi: 10.1534/g3.116.029900
PMCID:
PMC4978881
AbstractArticlePDF–1.9M
14.
A DNA binding winged helix domain in CAF-1 functions with PCNA to stabilize CAF-1 at replication forks
Kuo Zhang, Yuan Gao, Jingjing Li, Rebecca Burgess, Junhong Han, Huanhuan Liang, Zhiguo Zhang, Yingfang Liu
Nucleic Acids Res. 2016 Jun 20; 44(11): 5083–5094. Published online 2016 Feb 22. doi: 10.1093/nar/gkw106
PMCID:
PMC4914081
AbstractArticlePDF–5.1M
15.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
AbstractArticlePDF–1.7M
16.
A yeast phenomic model for the gene interaction network modulating CFTR-ΔF508 protein biogenesis
Raymond J Louie, Jingyu Guo, John W Rodgers, Rick White, Najaf A Shah, Silvere Pagant, Peter Kim, Michael Livstone, Kara Dolinski, Brett A McKinney, Jeong Hong, Eric J Sorscher, Jennifer Bryan, Elizabeth A Miller, John L Hartman, IV
Genome Med. 2012; 4(12): 103. Published online 2012 Dec 27. doi: 10.1186/gm404
PMCID:
PMC3906889
AbstractArticlePDF–2.5M
17.
The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing
Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie
PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101
PMCID:
PMC3510044
AbstractArticlePDF–3.4M
18.
A Potent Plant-Derived Antifungal Acetylenic Acid Mediates Its Activity by Interfering with Fatty Acid Homeostasis
Tao Xu, Siddharth K. Tripathi, Qin Feng, Michael C. Lorenz, Marsha A. Wright, Melissa R. Jacob, Melanie M. Mask, Scott R. Baerson, Xing-Cong Li, Alice M. Clark, Ameeta K. Agarwal
Antimicrob Agents Chemother. 2012 Jun; 56(6): 2894–2907. doi: 10.1128/AAC.05663-11
PMCID:
PMC3370752
AbstractArticlePDF–2.7M
19.
Rewiring of Genetic Networks in Response to DNA Damage
Sourav Bandyopadhyay, Monika Mehta, Dwight Kuo, Min-Kyung Sung, Ryan Chuang, Eric J. Jaehnig, Bernd Bodenmiller, Katherine Licon, Wilbert Copeland, Michael Shales, Dorothea Fiedler, Janusz Dutkowski, Aude Guénolé, Haico van Attikum, Kevan M. Shokat, Richard D. Kolodner, Won-Ki Huh, Ruedi Aebersold, Michael-Christopher Keogh, Nevan J. Krogan, Trey Ideker
Science. Author manuscript; available in PMC 2010 Dec 21.
Published in final edited form as: Science. 2010 Dec 3; 330(6009): 1385–1389. doi: 10.1126/science.1195618
Correction in:
volume 331 on page 284
PMCID:
PMC3006187
AbstractArticlePDF–1.9M
20.
Epistatic relationships reveal the functional organization of yeast transcription factors
Jiashun Zheng, Joris J Benschop, Michael Shales, Patrick Kemmeren, Jack Greenblatt, Gerard Cagney, Frank Holstege, Hao Li, Nevan J Krogan
Mol Syst Biol. 2010; 6: 420. Published online 2010 Oct 19. doi: 10.1038/msb.2010.77
PMCID:
PMC2990640
AbstractArticlePDF–3.5M

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