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Items: 1 to 20 of 24

1.
Different ER–plasma membrane tethers play opposing roles in autophagy of the cortical ER
Dongmei Liu, Hua Yuan, Shuliang Chen, Susan Ferro-Novick, Peter Novick
Proc Natl Acad Sci U S A. 2024 Jun 11; 121(24): e2321991121. Published online 2024 Jun 5. doi: 10.1073/pnas.2321991121
PMCID:
PMC11181077
AbstractArticlePDF–3.7M
2.
TOR‐mediated Ypt1 phosphorylation regulates autophagy initiation complex assembly
Weijing Yao, Yuting Chen, Yingcong Chen, Pengwei Zhao, Jing Liu, Yi Zhang, Qiang Jiang, Choufei Wu, Yu Xie, Siyu Fan, Miao Ye, Yigang Wang, Yuyao Feng, Xue Bai, Mingzhu Fan, Shan Feng, Juan Wang, Yixian Cui, Hongguang Xia, Cheng Ma, Zhiping Xie, Liqin Zhang, Qiming Sun, Wei Liu, Cong Yi
EMBO J. 2023 Oct; 42(19): e112814. Published online 2023 Aug 28. doi: 10.15252/embj.2022112814
PMCID:
PMC10548176
AbstractArticlePDF–19M
3.
The GET pathway serves to activate Atg32-mediated mitophagy by ER targeting of the Ppg1-Far complex
Mashun Onishi, Mitsutaka Kubota, Lan Duan, Yuan Tian, Koji Okamoto
Life Sci Alliance. 2023 Apr; 6(4): e202201640. Published online 2023 Jan 25. doi: 10.26508/lsa.202201640
PMCID:
PMC9880027
AbstractArticlePDF–3.2M
4.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
ER-phagy requires the assembly of actin at sites of contact between the cortical ER and endocytic pits
Dongmei Liu, Muriel Mari, Xia Li, Fulvio Reggiori, Susan Ferro-Novick, Peter Novick
Proc Natl Acad Sci U S A. 2022 Feb 8; 119(6): e2117554119. Published online 2022 Jan 31. doi: 10.1073/pnas.2117554119
PMCID:
PMC8833162
AbstractArticlePDF–2.4M
7.
Atg8-mediated super-assembly of Atg40 induces local ER remodeling in reticulophagy
Keisuke Mochida, Hitoshi Nakatogawa
Autophagy. 2020; 16(12): 2299–2300. Published online 2020 Oct 10. doi: 10.1080/15548627.2020.1831801
PMCID:
PMC7751648
AbstractArticlePDF–1.4M
8.
Characterization of constitutive ER-phagy of excess membrane proteins
Zhanna Lipatova, Valeriya Gyurkovska, Sarah F. Zhao, Nava Segev
PLoS Genet. 2020 Dec; 16(12): e1009255. Published online 2020 Dec 4. doi: 10.1371/journal.pgen.1009255
PMCID:
PMC7744050
AbstractArticlePDF–4.0M
9.
Snf1 AMPK positively regulates ER-phagy via expression control of Atg39 autophagy receptor in yeast ER stress response
Tomoaki Mizuno, Kei Muroi, Kenji Irie
PLoS Genet. 2020 Sep; 16(9): e1009053. Published online 2020 Sep 28. doi: 10.1371/journal.pgen.1009053
PMCID:
PMC7544123
AbstractArticlePDF–2.7M
10.
Vps13 is required for the packaging of the ER into autophagosomes during ER-phagy
Shuliang Chen, Muriel Mari, Smriti Parashar, Dongmei Liu, Yixian Cui, Fulvio Reggiori, Peter J. Novick, Susan Ferro-Novick
Proc Natl Acad Sci U S A. 2020 Aug 4; 117(31): 18530–18539. Published online 2020 Jul 20. doi: 10.1073/pnas.2008923117
PMCID:
PMC7414049
AbstractArticlePDF–2.0M
11.
TORC1 inactivation stimulates autophagy of nucleoporin and nuclear pore complexes
Yui Tomioka, Tetsuya Kotani, Hiromi Kirisako, Yu Oikawa, Yayoi Kimura, Hisashi Hirano, Yoshinori Ohsumi, Hitoshi Nakatogawa
J Cell Biol. 2020 Jul 6; 219(7): e201910063. Published online 2020 May 26. doi: 10.1083/jcb.201910063
PMCID:
PMC7337488
AbstractArticlePDF–4.0M
12.
Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes
Keisuke Mochida, Akinori Yamasaki, Kazuaki Matoba, Hiromi Kirisako, Nobuo N. Noda, Hitoshi Nakatogawa
Nat Commun. 2020; 11: 3306. Published online 2020 Jul 3. doi: 10.1038/s41467-020-17163-y
PMCID:
PMC7335187
AbstractArticlePDF–3.6M
13.
DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae
Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue
Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622
PMCID:
PMC7138222
AbstractArticlePDF–8.0M
14.
A COPII subunit acts with an autophagy receptor to target endoplasmic reticulum for degradation
Yixian Cui, Smriti Parashar, Muhammad Zahoor, Patrick G. Needham, Muriel Mari, Ming Zhu, Shuliang Chen, Hsuan-Chung Ho, Fulvio Reggiori, Hesso Farhan, Jeffrey L. Brodsky, Susan Ferro-Novick
Science. Author manuscript; available in PMC 2020 Mar 9.
Published in final edited form as: Science. 2019 Jul 5; 365(6448): 53–60. doi: 10.1126/science.aau9263
PMCID:
PMC7062386
AbstractArticlePDF–1.4M
15.
Analysis of autophagy activated during changes in carbon source availability in yeast cells
Ryo Iwama, Yoshinori Ohsumi
J Biol Chem. 2019 Apr 5; 294(14): 5590–5603. Published online 2019 Feb 12. doi: 10.1074/jbc.RA118.005698
PMCID:
PMC6462502
AbstractArticlePDF–4.4M
16.
ER-phagy requires Lnp1, a protein that stabilizes rearrangements of the ER network
Shuliang Chen, Yixian Cui, Smriti Parashar, Peter J. Novick, Susan Ferro-Novick
Proc Natl Acad Sci U S A. 2018 Jul 3; 115(27): E6237–E6244. Published online 2018 Jun 18. doi: 10.1073/pnas.1805032115
PMCID:
PMC6142256
AbstractArticlePDF–1.9M
17.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
18.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
19.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
20.
Reduced Glucose Sensation Can Increase the Fitness of Saccharomyces cerevisiae Lacking Mitochondrial DNA
Emel Akdoğan, Mehmet Tardu, Görkem Garipler, Gülkız Baytek, İ. Halil Kavakli, Cory D. Dunn
PLoS One. 2016; 11(1): e0146511. Published online 2016 Jan 11. doi: 10.1371/journal.pone.0146511
PMCID:
PMC4709096
AbstractArticlePDF–8.2M

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