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Select item 112328911.

Ca²⁺-triggered Atg11–Bmh1/2–Snf1 complex assembly initiates autophagy upon glucose starvation

Weijing Yao, Yingcong Chen, Yi Zhang, Shu Zhong, Miaojuan Ye, Yuting Chen, Siyu Fan, Miao Ye, Huan Yang, Yixing Li, Choufei Wu, Mingzhu Fan, Shan Feng, Zhaoxiang He, Long Zhou, Liqin Zhang, Yigang Wang, Wei Liu, Jingjing Tong, Du Feng, Cong Yi

J Cell Biol. 2024 Sep 2; 223(9): e202310049. Published online 2024 Jul 9. doi: 10.1083/jcb.202310049

PMCID:: PMC11232891

Article PDF–7.9M

Select item 111094832.

K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors

Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer

Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740

PMCID:: PMC11109483

Article PDF–2.9M

Select item 108724773.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Article PDF–1.7M

Select item 108512284.

The yeast AMP-activated protein kinase Snf1 phosphorylates the inositol polyphosphate kinase Kcs1

Sham Sunder, Joshua S. Bauman, Stuart J. Decker, Alexandra R. Lifton, Anuj Kumar

J Biol Chem. 2024 Feb; 300(2): 105657. Published online 2024 Jan 13. doi: 10.1016/j.jbc.2024.105657

PMCID:: PMC10851228

Article PDF–3.1M

Select item 107988585.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Article PDF–6.4M

Select item 107001386.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Article PDF–20M

Select item 102350867.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Article PDF–2.6M

Select item 102333688.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Article PDF–1.2M

Select item 99376569.

Snf1/AMPK fine-tunes TORC1 signaling in response to glucose starvation

Marco Caligaris, Raffaele Nicastro, Zehan Hu, Farida Tripodi, Johannes Erwin Hummel, Benjamin Pillet, Marie-Anne Deprez, Joris Winderickx, Sabine Rospert, Paola Coccetti, Jörn Dengjel, Claudio De Virgilio

eLife. 2023; 12: e84319. Published online 2023 Feb 7. doi: 10.7554/eLife.84319

PMCID:: PMC9937656

Article PDF–8.2M

Select item 983634810.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Article PDF–857K

Select item 948606011.

Regulation of yeast Snf1 (AMPK) by a polyhistidine containing pH sensing module

Kobi J. Simpson-Lavy, Martin Kupiec

iScience. 2022 Oct 21; 25(10): 105083. Published online 2022 Sep 6. doi: 10.1016/j.isci.2022.105083

PMCID:: PMC9486060

Article PDF–3.4M

Select item 941938012.

The multiple effects of REG1 deletion and SNF1 overexpression improved the production of S-adenosyl-l-methionine in Saccharomyces cerevisiae

Hailong Chen, Xiaoqin Chai, Yan Wang, Jing Liu, Guohai Zhou, Pinghe Wei, Yuhe Song, Lingman Ma

Microb Cell Fact. 2022; 21: 174. Published online 2022 Aug 27. doi: 10.1186/s12934-022-01900-7

PMCID:: PMC9419380

Article PDF–2.6M

Select item 933928413.

Fine-tuning acetyl-CoA carboxylase 1 activity through localization: functional genomics reveals a role for the lysine acetyltransferase NuA4 and sphingolipid metabolism in regulating Acc1 activity and localization

Trang Pham, Elizabeth Walden, Sylvain Huard, John Pezacki, Morgan D Fullerton, Kristin Baetz

Genetics. 2022 Aug; 221(4): iyac086. Published online 2022 May 24. doi: 10.1093/genetics/iyac086

PMCID:: PMC9339284

Article PDF–1.6M

Select item 928602314.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Article

Select item 924504315.

Cat8 Response to Nutritional Changes and Interaction With Ehrlich Pathway Related Factors

Zhengda Du, Hong Deng, Yanfei Cheng, Zhiguang Zhai, Xuena Guo, Zhaoyue Wang, Xiuping He

Front Microbiol. 2022; 13: 898938. Published online 2022 Jun 15. doi: 10.3389/fmicb.2022.898938

PMCID:: PMC9245043

Article PDF–3.3M

Select item 920981116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Article PDF–818K

Select item 884497617.

Metabolic remodeling maintains a reducing environment for rapid activation of the yeast DNA replication checkpoint

Lili Li, Jie Wang, Zijia Yang, Yiling Zhao, Hui Jiang, Luguang Jiang, Wenya Hou, Risheng Ye, Qun He, Martin Kupiec, Brian Luke, Qinhong Cao, Zhi Qi, Zhen Li, Huiqiang Lou

EMBO J. 2022 Feb 15; 41(4): e108290. Published online 2022 Jan 14. doi: 10.15252/embj.2021108290

PMCID:: PMC8844976

Article PDF–2.8M

Select item 880492918.

Oxidative stress protein Oxr1 promotes V‐ATPase holoenzyme disassembly in catalytic activity‐independent manner

Md. Murad Khan, Seowon Lee, Sergio Couoh‐Cardel, Rebecca A Oot, Hyunmin Kim, Stephan Wilkens, Soung‐Hun Roh

EMBO J. 2022 Feb 1; 41(3): e109360. Published online 2021 Dec 17. doi: 10.15252/embj.2021109360

PMCID:: PMC8804929

Article PDF–5.5M

Select item 846002819.

Drug resistance in diploid yeast is acquired through dominant alleles, haploinsufficiency, gene duplication and aneuploidy

Jordan B. Barney, Dakshayini G. Chandrashekarappa, Samantha R. Soncini, Martin C. Schmidt

PLoS Genet. 2021 Sep; 17(9): e1009800. Published online 2021 Sep 23. doi: 10.1371/journal.pgen.1009800

PMCID:: PMC8460028

Article PDF–4.7M

Select item 844905120.

Valproate activates the Snf1 kinase in Saccharomyces cerevisiae by decreasing the cytosolic pH

Michael Salsaa, Kerestin Aziz, Pablo Lazcano, Michael W. Schmidtke, Maureen Tarsio, Maik Hüttemann, Christian A. Reynolds, Patricia M. Kane, Miriam L. Greenberg

J Biol Chem. 2021 Oct; 297(4): 101110. Published online 2021 Aug 21. doi: 10.1016/j.jbc.2021.101110