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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108687272.

Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates

Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus

Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.

Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2

PMCID:: PMC10868727

Abstract Article PDF–7.0M

Select item 107988583.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 91047126.

Pls1 Is a Peroxisomal Matrix Protein with a Role in Regulating Lysine Biosynthesis

Yotam David, Inês Gomes Castro, Eden Yifrach, Chen Bibi, Enas Katawi, Dekel Yahav Har-Shai, Sagie Brodsky, Naama Barkai, Tommer Ravid, Miriam Eisenstein, Shmuel Pietrokovski, Maya Schuldiner, Einat Zalckvar

Cells. 2022 May; 11(9): 1426. Published online 2022 Apr 22. doi: 10.3390/cells11091426

PMCID:: PMC9104712

Abstract Article PDF–3.1M

Select item 68466847.

At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis

Sivakumar Vadivel Gnanasundram, Isabelle C Kos-Braun, Martin Koš

Nucleic Acids Res. 2019 Nov 18; 47(20): 10852–10864. Published online 2019 Sep 12. doi: 10.1093/nar/gkz767

PMCID:: PMC6846684

Abstract Article PDF–6.9M

Select item 63471708.

Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation

Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch

PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180

PMCID:: PMC6347170

Abstract Article PDF–16M

Select item 57653599.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 560565410.

Two NAD-linked redox shuttles maintain the peroxisomal redox balance in Saccharomyces cerevisiae

Nadal A. Al-Saryi, Murtakab Y Al-Hejjaj, Carlo W. T. van Roermund, Georgia E. Hulmes, Lakhan Ekal, Chantell Payton, Ronald J. A. Wanders, Ewald H. Hettema

Sci Rep. 2017; 7: 11868. Published online 2017 Sep 19. doi: 10.1038/s41598-017-11942-2

PMCID:: PMC5605654

Abstract Article PDF–2.9M

Select item 520434811.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 470301212.

Target selection by natural and redesigned PUF proteins

Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112

PMCID:: PMC4703012

Abstract Article PDF–1.3M

Select item 457068213.

Increasing proline and myo-inositol improves tolerance of Saccharomyces cerevisiae to the mixture of multiple lignocellulose-derived inhibitors

Xin Wang, Xue Bai, Dong-Fang Chen, Fu-Zan Chen, Bing-Zhi Li, Ying-Jin Yuan

Biotechnol Biofuels. 2015; 8: 142. Published online 2015 Sep 15. doi: 10.1186/s13068-015-0329-5

PMCID:: PMC4570682

Abstract Article PDF–3.2M

Select item 376403614.

Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation

Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez

PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086

PMCID:: PMC3764036

Abstract Article PDF–496K

Select item 355349715.

The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis

Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman

Cell. Author manuscript; available in PMC 2014 Jan 17.

Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001

PMCID:: PMC3553497

Abstract Article PDF–5.1M

Select item 346412016.

Functional Analysis With a Barcoder Yeast Gene Overexpression System

Alison C. Douglas, Andrew M. Smith, Sara Sharifpoor, Zhun Yan, Tanja Durbic, Lawrence E. Heisler, Anna Y. Lee, Owen Ryan, Hendrikje Göttert, Anu Surendra, Dewald van Dyk, Guri Giaever, Charles Boone, Corey Nislow, Brenda J. Andrews

G3 (Bethesda) 2012 Oct; 2(10): 1279–1289. Published online 2012 Oct 1. doi: 10.1534/g3.112.003400