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Items: 1 to 20 of 51

1.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Yeast Rpn4 Links the Proteasome and DNA Repair via RAD52 Regulation
Daria S. Spasskaya, Nonna I. Nadolinskaia, Vera V. Tutyaeva, Yuriy P. Lysov, Vadim L. Karpov, Dmitry S. Karpov
Int J Mol Sci. 2020 Nov; 21(21): 8097. Published online 2020 Oct 30. doi: 10.3390/ijms21218097
PMCID:
PMC7672625
AbstractArticlePDF–3.2M
4.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
5.
Expansion of base excision repair compensates for a lack of DNA repair by oxidative dealkylation in budding yeast
Suzanne J. Admiraal, Daniel E. Eyler, Michael R. Baldwin, Emily M. Brines, Christopher T. Lohans, Christopher J. Schofield, Patrick J. O'Brien
J Biol Chem. 2019 Sep 13; 294(37): 13629–13637. Published online 2019 Jul 18. doi: 10.1074/jbc.RA119.009813
PMCID:
PMC6746446
AbstractArticlePDF–1.1M
6.
Mapping DNA damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics
J Javier Díaz‐Mejía, Albi Celaj, Joseph C Mellor, Atina Coté, Attila Balint, Brandon Ho, Pritpal Bansal, Fatemeh Shaeri, Marinella Gebbia, Jochen Weile, Marta Verby, Anna Karkhanina, YiFan Zhang, Cassandra Wong, Justin Rich, D'Arcy Prendergast, Gaurav Gupta, Sedide Öztürk, Daniel Durocher, Grant W Brown, Frederick P Roth
Mol Syst Biol. 2018 May; 14(5): e7985. Published online 2018 May 28. doi: 10.15252/msb.20177985
PMCID:
PMC5974512
AbstractArticlePDF–2.2M
7.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
8.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
9.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
10.
The Shu complex promotes error-free tolerance of alkylation-induced base excision repair products
Stephen K. Godin, Zhuying Zhang, Benjamin W. Herken, James W. Westmoreland, Alison G. Lee, Michael J. Mihalevic, Zhongxun Yu, Robert W. Sobol, Michael A. Resnick, Kara A. Bernstein
Nucleic Acids Res. 2016 Sep 30; 44(17): 8199–8215. Published online 2016 Jun 13. doi: 10.1093/nar/gkw535
PMCID:
PMC5041462
AbstractArticlePDF–9.6M
11.
Rtt107 is a multi-functional scaffold supporting replication progression with partner SUMO and ubiquitin ligases
Lisa E Hang, Jie Peng, Wei Tan, Barnabas Szakal, Demis Menolfi, Ziwei Sheng, Kirill Lobachev, Dana Branzei, Wenyi Feng, Xiaolan Zhao
Mol Cell. Author manuscript; available in PMC 2016 Oct 15.
Published in final edited form as: Mol Cell. 2015 Oct 15; 60(2): 268–279. Published online 2015 Oct 1. doi: 10.1016/j.molcel.2015.08.023
PMCID:
PMC4609303
AbstractArticlePDF–2.1M
12.
Deletion of MAG1 and MRE11 enhances the sensitivity of the Saccharomyces cerevisiae HUG1P-GFP promoter-reporter construct to genotoxicity
Michael G. Benton, Nathaniel R. Glasser, Sean P. Palecek
Biosens Bioelectron. Author manuscript; available in PMC 2015 Aug 5.
Published in final edited form as: Biosens Bioelectron. 2008 Dec 1; 24(4): 736–741. Published online 2008 Jul 1. doi: 10.1016/j.bios.2008.06.033
PMCID:
PMC4526160
AbstractArticlePDF–575K
13.
The amino-terminal tails of histones H2A and H3 coordinate efficient base excision repair, DNA damage signaling and postreplication repair in Saccharomyces cerevisiae
Rithy Meas, Michael J. Smerdon, John J. Wyrick
Nucleic Acids Res. 2015 May 26; 43(10): 4990–5001. Published online 2015 Apr 20. doi: 10.1093/nar/gkv372
PMCID:
PMC4446432
AbstractArticlePDF–7.4M
14.
A Role for Saccharomyces cerevisiae Tpa1 Protein in Direct Alkylation Repair
Gururaj Shivange, Naveena Kodipelli, Mohan Monisha, Roy Anindya
J Biol Chem. 2014 Dec 26; 289(52): 35939–35952. Published online 2014 Nov 7. doi: 10.1074/jbc.M114.590216
PMCID:
PMC4276862
AbstractArticlePDF–1.3M
15.
Phosphatase Complex Pph3/Psy2 Is Involved in Regulation of Efficient Non-Homologous End-Joining Pathway in the Yeast Saccharomyces cerevisiae
Katayoun Omidi, Mohsen Hooshyar, Matthew Jessulat, Bahram Samanfar, Megan Sanders, Daniel Burnside, Sylvain Pitre, Andrew Schoenrock, Jianhua Xu, Mohan Babu, Ashkan Golshani
PLoS One. 2014; 9(1): e87248. Published online 2014 Jan 31. doi: 10.1371/journal.pone.0087248
PMCID:
PMC3909046
AbstractArticlePDF–796K
16.
Alkylation sensitivity screens reveal a conserved cross-species functionome
David Svilar, Madhu Dyavaiah, Ashley R. Brown, Jiang-bo Tang, Jianfeng Li, Peter R. McDonald, Tong Ying Shun, Andrea Braganza, Xiao-hong Wang, Salony Maniar, Claudette M. St Croix, John S. Lazo, Ian F. Pollack, Thomas J. Begley, Robert W. Sobol
Mol Cancer Res. Author manuscript; available in PMC 2014 Jan 1.
Published in final edited form as: Mol Cancer Res. 2012 Dec; 10(12): 10.1158/1541-7786.MCR-12-0168. Published online 2012 Oct 4. doi: 10.1158/1541-7786.MCR-12-0168
PMCID:
PMC3877719
AbstractArticlePDF–2.5M
17.
Harnessing mutagenic homologous recombination for targeted mutagenesis in vivo by TaGTEAM
Shawn P. Finney-Manchester, Narendra Maheshri
Nucleic Acids Res. 2013 May; 41(9): e99. Published online 2013 Mar 7. doi: 10.1093/nar/gkt150
PMCID:
PMC3643572
AbstractArticlePDF–6.2M
18.
The Preference for Error-Free or Error-Prone Postreplication Repair in Saccharomyces cerevisiae Exposed to Low-Dose Methyl Methanesulfonate Is Cell Cycle Dependent
Dongqing Huang, Brian D. Piening, Amanda G. Paulovich
Mol Cell Biol. 2013 Apr; 33(8): 1515–1527. doi: 10.1128/MCB.01392-12
PMCID:
PMC3624245
AbstractArticlePDF–1.7M
19.
Dissecting DNA damage response pathways by analyzing protein localization and abundance changes during DNA replication stress
Johnny M. Tkach, Askar Yimit, Anna Y. Lee, Michael Riffle, Michael Costanzo, Daniel Jaschob, Jason A. Hendry, Jiongwen Ou, Jason Moffat, Charles Boone, Trisha N. Davis, Corey Nislow, Grant W. Brown
Nat Cell Biol. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: Nat Cell Biol. 2012 Sep; 14(9): 966–976. Published online 2012 Jul 29. doi: 10.1038/ncb2549
PMCID:
PMC3434236
AbstractArticlePDF–1.5M
20.
Histone H3 Lysine 56 Acetylation and the Response to DNA Replication Fork Damage
Hugo Wurtele, Gitte Schalck Kaiser, Julien Bacal, Edlie St-Hilaire, Eun-Hye Lee, Sarah Tsao, Jonas Dorn, Paul Maddox, Michael Lisby, Philippe Pasero, Alain Verreault
Mol Cell Biol. 2012 Jan; 32(1): 154–172. doi: 10.1128/MCB.05415-11
PMCID:
PMC3255698
AbstractArticlePDF–4.0M

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