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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102350863.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 96380285.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 92860236.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 72731778.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 68583309.

Rab5-mediated endosome formation is regulated at the trans-Golgi network

Makoto Nagano, Junko Y. Toshima, Daria Elisabeth Siekhaus, Jiro Toshima

Commun Biol. 2019; 2: 419. Published online 2019 Nov 15. doi: 10.1038/s42003-019-0670-5

PMCID:: PMC6858330

Abstract Article PDF–2.5M

Select item 632493810.

A steric gating mechanism dictates the substrate specificity of a Rab-GEF

Laura L. Thomas, Solveig A. van der Vegt, J. Christopher Fromme

Dev Cell. Author manuscript; available in PMC 2020 Jan 7.

Published in final edited form as: Dev Cell. 2019 Jan 7; 48(1): 100–114.e9. Published online 2018 Dec 6. doi: 10.1016/j.devcel.2018.11.013

PMCID:: PMC6324938

Abstract Article PDF–2.9M

Select item 576535911.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 574898412.

The TRAPPIII complex activates the GTPase Ypt1 (Rab1) in the secretory pathway

Laura L. Thomas, Aaron M.N. Joiner, J. Christopher Fromme

J Cell Biol. 2018 Jan 2; 217(1): 283–298. doi: 10.1083/jcb.201705214

PMCID:: PMC5748984

Abstract Article PDF–2.7M

Select item 547375513.

Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28

Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink

G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317

Correction in:: G3 (Bethesda). 2019 Aug; 9(8): 2787.

PMCID:: PMC5473755

Abstract Article PDF–2.7M

Select item 520434814.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 511994215.

GTPase cross talk regulates TRAPPII activation of Rab11 homologues during vesicle biogenesis

Laura L. Thomas, J. Christopher Fromme

J Cell Biol. 2016 Nov 21; 215(4): 499–513. doi: 10.1083/jcb.201608123

PMCID:: PMC5119942

Abstract Article PDF–2.8M

Select item 506299416.

Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae

Thierry Delaveau, Dimitri Davoine, Ariane Jolly, Antoine Vallot, Jérôme O. Rouvière, Athenaïs Gerber, Sandra Brochet, Marion Plessis, Roxane Roquigny, Jawad Merhej, Thibaut Leger, Camille Garcia, Gaëlle Lelandais, Elodie Laine, Benoit Palancade, Frédéric Devaux, Mathilde Garcia

Nucleic Acids Res. 2016 Oct 14; 44(18): 8826–8841. Published online 2016 Aug 31. doi: 10.1093/nar/gkw732

PMCID:: PMC5062994

Abstract Article PDF–3.3M

Select item 443181017.

The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation

Lydia M. Castelli, David Talavera, Christopher J. Kershaw, Sarah S. Mohammad-Qureshi, Joseph L. Costello, William Rowe, Paul F. G. Sims, Christopher M. Grant, Simon J. Hubbard, Mark P. Ashe, Graham D. Pavitt

PLoS Genet. 2015 May; 11(5): e1005233. Published online 2015 May 14. doi: 10.1371/journal.pgen.1005233

PMCID:: PMC4431810

Abstract Article PDF–5.5M

Select item 405396418.

Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae

Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim

Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13

PMCID:: PMC4053964

Abstract Article PDF–1.7M

Select item 394597019.

Trs20 is required for TRAPP III complex assembly at the PAS and its function in autophagy

David Taussig, Zhanna Lipatova, Nava Segev

Traffic. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Traffic. 2014 Mar; 15(3): 327–337. Published online 2014 Jan 14. doi: 10.1111/tra.12145

PMCID:: PMC3945970

Abstract Article PDF–2.5M

Select item 379131220.

A Lipid E-MAP Identifies Ubx2 as a Critical Regulator of Lipid Saturation and Lipid Bilayer Stress

Michal A. Surma, Christian Klose, Debby Peng, Michael Shales, Caroline Mrejen, Adam Stefanko, Hannes Braberg, David E. Gordon, Daniela Vorkel, Christer S. Ejsing, Robert Farese, Jr., Kai Simons, Nevan J. Krogan, Robert Ernst

Mol Cell. Author manuscript; available in PMC 2014 Aug 22.

Published in final edited form as: Mol Cell. 2013 Aug 22; 51(4): 519–530. Published online 2013 Jul 25. doi: 10.1016/j.molcel.2013.06.014