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Items: 1 to 20 of 32

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
3.
Reconstitution of RNA Polymerase I Upstream Activating Factor and the Roles of Histones H3 and H4 in Complex Assembly
Marissa L. Smith, Weidong Cui, Ashleigh J. Jackobel, Nancy Walker-Kopp, Bruce A. Knutson
J Mol Biol. Author manuscript; available in PMC 2022 Dec 13.
Published in final edited form as: J Mol Biol. 2018 Mar 2; 430(5): 641–654. Published online 2018 Jan 31. doi: 10.1016/j.jmb.2018.01.003
PMCID:
PMC9746128
AbstractArticlePDF–1.4M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Non-Coding, RNAPII-Dependent Transcription at the Promoters of rRNA Genes Regulates Their Chromatin State in S. cerevisiae
Emma Lesage, Jorge Perez-Fernandez, Sophie Queille, Christophe Dez, Olivier Gadal, Marta Kwapisz
Noncoding RNA. 2021 Sep; 7(3): 41. Published online 2021 Jul 11. doi: 10.3390/ncrna7030041
PMCID:
PMC8293398
AbstractArticlePDF–1.7M
6.
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone
Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.
Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855
PMCID:
PMC7386433
AbstractArticlePDF–1.0M
7.
Molecular Topology of RNA Polymerase I Upstream Activation Factor
Bruce A. Knutson, Marissa L. Smith, Alana E. Belkevich, Aula M. Fakhouri
Mol Cell Biol. 2020 Jul; 40(13): e00056-20. Prepublished online 2020 Apr 6. Published online 2020 Jun 15. doi: 10.1128/MCB.00056-20
PMCID:
PMC7296216
AbstractArticlePDF–3.2M
8.
Genomic copy-number loss is rescued by self-limiting production of DNA circles
Andrés Mansisidor, Temistocles Molinar, Jr., Priyanka Srivastava, Demetri D. Dartis, Adriana Pino Delgado, Hannah G. Blitzblau, Hannah Klein, Andreas Hochwagen
Mol Cell. Author manuscript; available in PMC 2019 Nov 1.
Published in final edited form as: Mol Cell. 2018 Nov 1; 72(3): 583–593.e4. Published online 2018 Oct 4. doi: 10.1016/j.molcel.2018.08.036
PMCID:
PMC6214758
AbstractArticlePDF–1.6M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
12.
The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
PMCID:
PMC5484544
AbstractArticlePDF–14M
13.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
14.
The Transcription Factor THO Promotes Transcription Initiation and Elongation by RNA Polymerase I
Yinfeng Zhang, Sarah L. French, Ann L. Beyer, David A. Schneider
J Biol Chem. 2016 Feb 5; 291(6): 3010–3018. Published online 2015 Dec 9. doi: 10.1074/jbc.M115.673442
PMCID:
PMC4742762
AbstractArticlePDF–1.4M
15.
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Mallory A Freeberg, Ting Han, James J Moresco, Andy Kong, Yu-Cheng Yang, Zhi John Lu, John R Yates, John K Kim
Genome Biol. 2013; 14(2): R13. Published online 2013 Feb 14. doi: 10.1186/gb-2013-14-2-r13
PMCID:
PMC4053964
AbstractArticlePDF–1.7M
16.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
17.
The Shu complex regulates Rad52 localization during rDNA repair Running Head: Shu1 promotes rDNA repair
Kara A. Bernstein, Amélie Juanchich, Ivana Sunjevaric, Rodney Rothstein
DNA Repair (Amst) Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: DNA Repair (Amst). 2013 Sep; 12(9): 10.1016/j.dnarep.2013.05.003. Published online 2013 Jun 19. doi: 10.1016/j.dnarep.2013.05.003
PMCID:
PMC3811918
AbstractArticlePDF–1.1M
18.
Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation
Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez
PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086
PMCID:
PMC3764036
AbstractArticlePDF–496K
19.
Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae
Cheol Woong Ha, Min-Kyung Sung, Won-Ki Huh
Nucleic Acids Res. 2012 Jun; 40(11): 4892–4903. Published online 2012 Feb 22. doi: 10.1093/nar/gks188
PMCID:
PMC3367210
AbstractArticlePDF–1.8M
20.
Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses
Joshua M. Gilmore, Mihaela E. Sardiu, Swaminathan Venkatesh, Brent Stutzman, Allison Peak, Chris W. Seidel, Jerry L. Workman, Laurence Florens, Michael P. Washburn
Mol Cell Proteomics. 2012 Apr; 11(4): M111.011544. Published online 2011 Dec 22. doi: 10.1074/mcp.M111.011544
PMCID:
PMC3322567
AbstractArticlePDF–2.3M

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