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Items: 1 to 20 of 139

1.
Evidence that Xrn1 is in complex with Gcn1, and is required for full levels of eIF2α phosphorylation
Renuka Shanmugam, Reuben Anderson, Anja H. Schiemann, Evelyn Sattlegger
Biochem J. 2024 Apr 10; 481(7): 481–498. Published online 2024 Mar 28. doi: 10.1042/BCJ20220531
PMCID:
PMC11088878
AbstractArticlePDF–3.2M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The ubiquitin conjugase Rad6 mediates ribosome pausing during oxidative stress
Sezen Meydan, Géssica C. Barros, Vanessa Simões, Lana Harley, Blanche K. Cizubu, Nicholas R. Guydosh, Gustavo M. Silva
Cell Rep. Author manuscript; available in PMC 2023 Dec 29.
Published in final edited form as: Cell Rep. 2023 Nov 28; 42(11): 113359. Published online 2023 Nov 2. doi: 10.1016/j.celrep.2023.113359
PMCID:
PMC10755677
AbstractArticlePDF–1.1M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
A Zpr1 co-chaperone mediates folding of eukaryotic translation elongation factor 1A via a GTPase cycle
Alexander J. McQuown, Anjali R. Nelliat, Dvir Reif, Ibrahim M. Sabbarini, Britnie Santiago Membreno, Colin Chih-Chien Wu, Vladimir Denic
Mol Cell. Author manuscript; available in PMC 2024 Sep 7.
Published in final edited form as: Mol Cell. 2023 Sep 7; 83(17): 3108–3122.e13. Published online 2023 Aug 18. doi: 10.1016/j.molcel.2023.07.028
PMCID:
PMC10528422
AbstractArticlePDF–3.0M
6.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
7.
Differential requirements for P stalk components in activating yeast protein kinase Gcn2 by stalled ribosomes during stress
Ritu Gupta, Alan G. Hinnebusch
Proc Natl Acad Sci U S A. 2023 Apr 18; 120(16): e2300521120. Published online 2023 Apr 12. doi: 10.1073/pnas.2300521120
PMCID:
PMC10120022
AbstractArticlePDF–1.5M
8.
DBP7 and YRF1-6 Are Involved in Cell Sensitivity to LiCl by Regulating the Translation of PGM2 mRNA
Sasi Kumar Jagadeesan, Mustafa Al-gafari, Jiashu Wang, Sarah Takallou, Danielle Allard, Maryam Hajikarimlou, Thomas David Daniel Kazmirchuk, Houman Moteshareie, Kamaledin B. Said, Reza Nokhbeh, Myron Smith, Bahram Samanfar, Ashkan Golshani
Int J Mol Sci. 2023 Jan; 24(2): 1785. Published online 2023 Jan 16. doi: 10.3390/ijms24021785
PMCID:
PMC9864399
AbstractArticlePDF–3.4M
9.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
10.
A genetic approach to identify amino acids in Gcn1 required for Gcn2 activation
Susanne Gottfried, Siaosi M. B. M. J. Koloamatangi, Clement Daube, Anja H. Schiemann, Evelyn Sattlegger
PLoS One. 2022; 17(11): e0277648. Published online 2022 Nov 28. doi: 10.1371/journal.pone.0277648
PMCID:
PMC9704636
AbstractArticlePDF–3.4M
11.
Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion
Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton
Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019
PMCID:
PMC9286023
AbstractArticle
12.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
13.
Snx4-assisted vacuolar targeting of transcription factors defines a new autophagy pathway for controlling ATG expression
Sara E. Hanley, Stephen D. Willis, Katrina F. Cooper
Autophagy. 2021; 17(11): 3547–3565. Published online 2021 Mar 8. doi: 10.1080/15548627.2021.1877934
PMCID:
PMC8632336
AbstractArticlePDF–5.1M
14.
Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast
Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu
Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680
PMCID:
PMC8421204
AbstractArticlePDF–2.9M
15.
The Yeast eIF2 Kinase Gcn2 Facilitates H2O2-Mediated Feedback Inhibition of Both Protein Synthesis and Endoplasmic Reticulum Oxidative Folding during Recombinant Protein Production
Veronica Gast, Kate Campbell, Cecilia Picazo, Martin Engqvist, Verena Siewers, Mikael Molin
Appl Environ Microbiol. 2021 Aug; 87(15): e00301-21. Prepublished online 2021 May 28. Published online 2021 Jul 13. doi: 10.1128/AEM.00301-21
PMCID:
PMC8276805
AbstractArticlePDF–1.2M
16.
Origin of translational control by eIF2α phosphorylation: Insights from genome-wide translational profiling studies in fission yeast
Katsura Asano
Curr Genet. Author manuscript; available in PMC 2022 Jun 1.
Published in final edited form as: Curr Genet. 2021 Jun; 67(3): 359–368. Published online 2021 Jan 9. doi: 10.1007/s00294-020-01149-w
PMCID:
PMC8140999
AbstractArticlePDF–1.4M
17.
Methylated PP2A stabilizes Gcn4 to enable a methionine-induced anabolic program
Adhish S. Walvekar, Ganesh Kadamur, Sreesa Sreedharan, Ritu Gupta, Rajalakshmi Srinivasan, Sunil Laxman
J Biol Chem. 2020 Dec 25; 295(52): 18390–18405. Published online 2021 Jan 13. doi: 10.1074/jbc.RA120.014248
PMCID:
PMC7939465
AbstractArticlePDF–3.0M
18.
CiBER-Seq dissects genetic networks by quantitative CRISPRi profiling of expression phenotypes
Ryan Muller, Zuriah A. Meacham, Lucas Ferguson, Nicholas T. Ingolia
Science. Author manuscript; available in PMC 2021 Jun 11.
Published in final edited form as: Science. 2020 Dec 11; 370(6522): eabb9662. doi: 10.1126/science.abb9662
PMCID:
PMC7819735
AbstractArticlePDF–2.3M
19.
Hypomodified tRNA in evolutionarily distant yeasts can trigger rapid tRNA decay to activate the general amino acid control response, but with different consequences
Thareendra De Zoysa, Eric M. Phizicky
PLoS Genet. 2020 Aug; 16(8): e1008893. Published online 2020 Aug 25. doi: 10.1371/journal.pgen.1008893
PMCID:
PMC7473580
AbstractArticlePDF–4.8M
20.
Filament formation by the translation factor eIF2B regulates protein synthesis in starved cells
Elisabeth Nüske, Guendalina Marini, Doris Richter, Weihua Leng, Aliona Bogdanova, Titus M. Franzmann, Gaia Pigino, Simon Alberti
Biol Open. 2020 Jul 15; 9(7): bio046391. Published online 2020 Jul 8. doi: 10.1242/bio.046391
PMCID:
PMC7358136
AbstractArticlePDF–4.7M

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