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Items: 1 to 20 of 44

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
Systematic Screening of Penetratin’s Protein Targets by Yeast Proteome Microarrays
Pramod Shah, Chien-Sheng Chen
Int J Mol Sci. 2022 Jan; 23(2): 712. Published online 2022 Jan 10. doi: 10.3390/ijms23020712
PMCID:
PMC8775591
AbstractArticlePDF–5.0M
3.
A glucose-starvation response governs endocytic trafficking and eisosomal retention of surface cargoes in budding yeast
Kamilla M. E. Laidlaw, Daniel D. Bisinski, Sviatlana Shashkova, Katherine M. Paine, Malaury A. Veillon, Mark C. Leake, Chris MacDonald
J Cell Sci. 2021 Jan 15; 134(2): jcs257733. Published online 2021 Jan 25. doi: 10.1242/jcs.257733
PMCID:
PMC7860119
AbstractArticle
4.
A putative bet hedging strategy buffers budding yeast against environmental instability
Laura E. Bagamery, Quincey A. Justman, Ethan C. Garner, Andrew W. Murray
Curr Biol. Author manuscript; available in PMC 2021 Dec 7.
Published in final edited form as: Curr Biol. 2020 Dec 7; 30(23): 4563–4578.e4. Published online 2020 Sep 24. doi: 10.1016/j.cub.2020.08.092
PMCID:
PMC7726042
AbstractArticlePDF–1.9M
5.
Snf1 AMPK positively regulates ER-phagy via expression control of Atg39 autophagy receptor in yeast ER stress response
Tomoaki Mizuno, Kei Muroi, Kenji Irie
PLoS Genet. 2020 Sep; 16(9): e1009053. Published online 2020 Sep 28. doi: 10.1371/journal.pgen.1009053
PMCID:
PMC7544123
AbstractArticlePDF–2.7M
6.
The cellular economy of the Saccharomyces cerevisiae zinc proteome
Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide
Metallomics. Author manuscript; available in PMC 2019 Dec 12.
Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j
PMCID:
PMC6291366
AbstractArticlePDF–3.0M
7.
Distributed and dynamic intracellular organization of extracellular information
Alejandro A. Granados, Julian M. J. Pietsch, Sarah A. Cepeda-Humerez, Iseabail L. Farquhar, Gašper Tkačik, Peter S. Swain
Proc Natl Acad Sci U S A. 2018 Jun 5; 115(23): 6088–6093. Published online 2018 May 21. doi: 10.1073/pnas.1716659115
PMCID:
PMC6003323
AbstractArticlePDF–1.3M
8.
Association of improved oxidative stress tolerance and alleviation of glucose repression with superior xylose-utilization capability by a natural isolate of Saccharomyces cerevisiae
Cheng Cheng, Rui-Qi Tang, Liang Xiong, Ronald E. Hector, Feng-Wu Bai, Xin-Qing Zhao
Biotechnol Biofuels. 2018; 11: 28. Published online 2018 Feb 5. doi: 10.1186/s13068-018-1018-y
PMCID:
PMC5798184
AbstractArticlePDF–2.2M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
12.
Multilevel regulation of an α-arrestin by glucose depletion controls hexose transporter endocytosis
Junie Hovsepian, Quentin Defenouillère, Véronique Albanèse, Libuše Váchová, Camille Garcia, Zdena Palková, Sébastien Léon
J Cell Biol. 2017 Jun 5; 216(6): 1811–1831. doi: 10.1083/jcb.201610094
PMCID:
PMC5461024
AbstractArticlePDF–3.1M
13.
Loss of Cardiolipin Leads to Perturbation of Acetyl-CoA Synthesis
Vaishnavi Raja, Amit S. Joshi, Guiling Li, Krishna Rao Maddipati, Miriam L. Greenberg
J Biol Chem. 2017 Jan 20; 292(3): 1092–1102. Published online 2016 Dec 9. doi: 10.1074/jbc.M116.753624
PMCID:
PMC5247643
AbstractArticlePDF–1.3M
14.
The β subunit of yeast AMP-activated protein kinase directs substrate specificity in response to alkaline stress
Dakshayini G. Chandrashekarappa, Rhonda R. McCartney, Allyson F. O’Donnell, Martin C. Schmidt
Cell Signal. Author manuscript; available in PMC 2017 Dec 1.
Published in final edited form as: Cell Signal. 2016 Dec; 28(12): 1881–1893. Published online 2016 Aug 31. doi: 10.1016/j.cellsig.2016.08.016
PMCID:
PMC5067241
AbstractArticlePDF–2.8M
15.
The catalytic efficiency of yeast ribonuclease III depends on substrate specific product release rate
Marc-Andre Comeau, Daniel A. Lafontaine, Sherif Abou Elela
Nucleic Acids Res. 2016 Sep 19; 44(16): 7911–7921. Published online 2016 Jun 1. doi: 10.1093/nar/gkw507
PMCID:
PMC5027489
AbstractArticlePDF–2.9M
16.
Hexokinase 2 Is an Intracellular Glucose Sensor of Yeast Cells That Maintains the Structure and Activity of Mig1 Protein Repressor Complex
Montserrat Vega, Alberto Riera, Alejandra Fernández-Cid, Pilar Herrero, Fernando Moreno
J Biol Chem. 2016 Apr 1; 291(14): 7267–7285. Published online 2016 Feb 10. doi: 10.1074/jbc.M115.711408
PMCID:
PMC4817161
AbstractArticlePDF–2.6M
17.
A Nonlinear Mixed Effects Approach for Modeling the Cell-To-Cell Variability of Mig1 Dynamics in Yeast
Joachim Almquist, Loubna Bendrioua, Caroline Beck Adiels, Mattias Goksör, Stefan Hohmann, Mats Jirstrand
PLoS One. 2015; 10(4): e0124050. Published online 2015 Apr 20. doi: 10.1371/journal.pone.0124050
Correction in:
PLoS One. 2015; 10(6): e0131657.
PMCID:
PMC4404321
AbstractArticlePDF–2.6M
18.
Proteasomes, Sir2, and Hxk2 Form an Interconnected Aging Network That Impinges on the AMPK/Snf1-Regulated Transcriptional Repressor Mig1
Yanhua Yao, Scott Tsuchiyama, Ciyu Yang, Anne Laure Bulteau, Chong He, Brett Robison, Mitsuhiro Tsuchiya, Delana Miller, Valeria Briones, Krisztina Tar, Anahi Potrero, Bertrand Friguet, Brian K. Kennedy, Marion Schmidt
PLoS Genet. 2015 Jan; 11(1): e1004968. Published online 2015 Jan 28. doi: 10.1371/journal.pgen.1004968
PMCID:
PMC4309596
AbstractArticlePDF–8.0M
19.
Coregulated Expression of the Na+/Phosphate Pho89 Transporter and Ena1 Na+-ATPase Allows Their Functional Coupling under High-pH Stress
Albert Serra-Cardona, Silvia Petrezsélyová, David Canadell, José Ramos, Joaquín Ariño
Mol Cell Biol. 2014 Dec; 34(24): 4420–4435. doi: 10.1128/MCB.01089-14
PMCID:
PMC4248728
AbstractArticlePDF–1.9M
20.
Pulsatile Dynamics in the Yeast Proteome
Chiraj K. Dalal, Long Cai, Yihan Lin, Kasra Rahbar, Michael B. Elowitz
Curr Biol. Author manuscript; available in PMC 2015 Sep 22.
Published in final edited form as: Curr Biol. 2014 Sep 22; 24(18): 2189–2194. Published online 2014 Sep 11. doi: 10.1016/j.cub.2014.07.076
PMCID:
PMC4203654
AbstractArticlePDF–985K

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