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Select item 108987351.

Endolysosomal trafficking controls yolk granule biogenesis in vitellogenic Drosophila oocytes

Yue Yu, Dongsheng Chen, Stephen M. Farmer, Shiyu Xu, Beatriz Rios, Amanda Solbach, Xin Ye, Lili Ye, Sheng Zhang

PLoS Genet. 2024 Feb; 20(2): e1011152. Published online 2024 Feb 5. doi: 10.1371/journal.pgen.1011152

PMCID:: PMC10898735

Abstract Article PDF–9.6M

Select item 108477152.

Fourth Chromosome Resource Project: a comprehensive resource for genetic analysis in Drosophila that includes humanized stocks

Michael J Stinchfield, Brandon P Weasner, Bonnie M Weasner, David Zhitomersky, Justin P Kumar, Michael B O’Connor, Stuart J Newfeld

Genetics. 2024 Feb; 226(2): iyad201. Published online 2023 Nov 20. doi: 10.1093/genetics/iyad201

PMCID:: PMC10847715

Abstract Article PDF–1.2M

Select item 102675613.

PI3P-dependent regulation of cell size and autophagy by phosphatidylinositol 5-phosphate 4-kinase

Avishek Ghosh, Aishwarya Venugopal, Dhananjay Shinde, Sanjeev Sharma, Meera Krishnan, Swarna Mathre, Harini Krishnan, Sankhanil Saha, Padinjat Raghu

Life Sci Alliance. 2023 Sep; 6(9): e202301920. Published online 2023 Jun 14. doi: 10.26508/lsa.202301920

PMCID:: PMC10267561

Abstract Article PDF–3.9M

Select item 92426474.

Hypoxia controls plasma membrane targeting of polarity proteins by dynamic turnover of PI4P and PI(4,5)P2

Juan Lu, Wei Dong, Gerald R Hammond, Yang Hong

eLife. 2022; 11: e79582. Published online 2022 Jun 9. doi: 10.7554/eLife.79582

PMCID:: PMC9242647

Abstract Article PDF–8.2M

Select item 81948285.

Conserved RNA Binding Activity of Phosphatidyl Inositol 5-Phosphate 4-Kinase (PIP4K2A)

Jatin Behari, Pranita Borkar, Arya Vindu, Vishal Dandewad, Sindhuri Upadrasta, Dhanasekaran Shanmugam, Vasudevan Seshadri

Front Mol Biosci. 2021; 8: 631281. Published online 2021 May 28. doi: 10.3389/fmolb.2021.631281

PMCID:: PMC8194828

Abstract Article PDF–2.0M

Select item 77719636.

A genome engineering resource to uncover principles of cellular organization and tissue architecture by lipid signaling

Deepti Trivedi, Vinitha CM, Karishma Bisht, Vishnu Janardan, Awadhesh Pandit, Bishal Basak, Shwetha H, Navyashree Ramesh, Padinjat Raghu

eLife. 2020; 9: e55793. Published online 2020 Dec 15. doi: 10.7554/eLife.55793

PMCID:: PMC7771963

Abstract Article PDF–1.6M

Select item 69615787.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 68225138.

A novel mass assay to measure phosphatidylinositol-5-phosphate from cells and tissues

Avishek Ghosh, Sanjeev Sharma, Dhananjay Shinde, Visvanathan Ramya, Padinjat Raghu

Biosci Rep. 2019 Oct 30; 39(10): BSR20192502. Published online 2019 Oct 21. doi: 10.1042/BSR20192502

PMCID:: PMC6822513

Abstract Article PDF–1.3M

Select item 65911329.

Phosphatidylinositol 5 Phosphate 4-Kinase Regulates Plasma-Membrane PIP₃ Turnover and Insulin Signaling

Sanjeev Sharma, Swarna Mathre, Visvanathan Ramya, Dhananjay Shinde, Padinjat Raghu

Cell Rep. Author manuscript; available in PMC 2019 Jun 24.

Published in final edited form as: Cell Rep. 2019 May 14; 27(7): 1979–1990.e7. doi: 10.1016/j.celrep.2019.04.084

PMCID:: PMC6591132

Abstract Article PDF–2.1M

Select item 637950910.

Functional analysis of the biochemical activity of mammalian phosphatidylinositol 5 phosphate 4-kinase enzymes

Swarna Mathre, K. Balasankara Reddy, Visvanathan Ramya, Harini Krishnan, Avishek Ghosh, Padinjat Raghu

Biosci Rep. 2019 Feb 28; 39(2): BSR20182210. Prepublished online 2019 Feb 4. Published online 2019 Feb 19. doi: 10.1042/BSR20182210

PMCID:: PMC6379509

Abstract Article PDF–1.4M

Select item 596384711.

Genetic dissection of the phosphoinositide cycle in Drosophila photoreceptors

Che-Hsiung Liu, Murali K. Bollepalli, Samuel V. Long, Sabrina Asteriti, Julie Tan, Julie A. Brill, Roger C. Hardie

J Cell Sci. 2018 Apr 15; 131(8): jcs214478. Published online 2018 Apr 19. doi: 10.1242/jcs.214478

PMCID:: PMC5963847

Abstract Article

Select item 574342712.

Inhibition of PIP4Kγ ameliorates the pathological effects of mutant huntingtin protein

Ismael Al-Ramahi, Sai Srinivas Panapakkam Giridharan, Yu-Chi Chen, Samarjit Patnaik, Nathaniel Safren, Junya Hasegawa, Maria de Haro, Amanda K Wagner Gee, Steven A Titus, Hyunkyung Jeong, Jonathan Clarke, Dimitri Krainc, Wei Zheng, Robin F Irvine, Sami Barmada, Marc Ferrer, Noel Southall, Lois S Weisman, Juan Botas, Juan Jose Marugan

eLife. 2017; 6: e29123. Published online 2017 Dec 26. doi: 10.7554/eLife.29123

PMCID:: PMC5743427

Abstract Article PDF–2.8M

Select item 571445613.

Dendritic Cytoskeletal Architecture Is Modulated by Combinatorial Transcriptional Regulation in Drosophila melanogaster

Ravi Das, Shatabdi Bhattacharjee, Atit A. Patel, Jenna M. Harris, Surajit Bhattacharya, Jamin M. Letcher, Sarah G. Clark, Sumit Nanda, Eswar Prasad R. Iyer, Giorgio A. Ascoli, Daniel N. Cox

Genetics. 2017 Dec; 207(4): 1401–1421. Published online 2017 Oct 12. doi: 10.1534/genetics.117.300393

PMCID:: PMC5714456

Abstract Article PDF–4.4M

Select item 570780514.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900215.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 553688816.

Phosphatidylinositol 5-phosphate 4-kinase regulates early endosomal dynamics during clathrin-mediated endocytosis

Kumari Kamalesh, Deepti Trivedi, Sarah Toscano, Sanjeev Sharma, Sourav Kolay, Padinjat Raghu

J Cell Sci. 2017 Jul 1; 130(13): 2119–2133. doi: 10.1242/jcs.202259

PMCID:: PMC5536888

Abstract Article

Select item 503306117.

An integrative analysis of the InR/PI3K/Akt network identifies the dynamic response to Insulin signaling

Arunachalam Vinayagam, Meghana M. Kulkarni, Richelle Sopko, Xiaoyun Sun, Yanhui Hu, Ankita Nand, Christians Villalta, Ahmadali Moghimi, Xuemei Yang, Stephanie E. Mohr, Pengyu Hong, John Asara, Norbert Perrimon

Cell Rep. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Cell Rep. 2016 Sep 13; 16(11): 3062–3074. doi: 10.1016/j.celrep.2016.08.029

PMCID:: PMC5033061

Abstract Article PDF–3.3M

Select item 473800518.

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes

Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili

Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062

PMCID:: PMC4738005

Abstract Article PDF–205K

Select item 467427719.

The Ski2-family helicase Obelus regulates Crumbs alternative splicing and cell polarity

Athea Vichas, Matthew T. Laurie, Jennifer A. Zallen

J Cell Biol. 2015 Dec 7; 211(5): 1011–1024. doi: 10.1083/jcb.201504083

PMCID:: PMC4674277

Abstract Article PDF–2.9M

Select item 452833020.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

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