PMC Links for GEO Profiles (Select 32387518) - PMC

Result Filters

Links from GEO Profiles

Items: 1 to 20 of 27

<< First< Prev

Page of 2

Next >Last >>

Select item 78760451.

Nascent RNA sequencing identifies a widespread sigma70-dependent pausing regulated by Gre factors in bacteria

Zhe Sun, Alexander V. Yakhnin, Peter C. FitzGerald, Carl E. Mclntosh, Mikhail Kashlev

Nat Commun. 2021; 12: 906. Published online 2021 Feb 10. doi: 10.1038/s41467-021-21150-2

PMCID:: PMC7876045

Abstract Article PDF–5.7M

Select item 76118092.

Structural Basis of Transcription: RNA Polymerase backtracking and its reactivation

Mo’men Abdelkareem, Charlotte Saint-André, Maria Takacs, Gabor Papai, Corinne Crucifix, Xieyang Guo, Xieyang Guo, Julio Ortiz, Albert Weixlbaumer

Mol Cell. Author manuscript; available in PMC 2021 Oct 18.

Published in final edited form as: Mol Cell. 2019 Jul 25; 75(2): 298–309.e4. Published online 2019 May 15. doi: 10.1016/j.molcel.2019.04.029

PMCID:: PMC7611809

Abstract Article PDF–6.1M

Select item 70283713.

Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription

Sarah K Stumper, Harini Ravi, Larry J Friedman, Rachel Anne Mooney, Ivan R Corrêa, Jnr, Anne Gershenson, Robert Landick, Jeff Gelles

eLife. 2019; 8: e40576. Published online 2019 Feb 5. doi: 10.7554/eLife.40576

PMCID:: PMC7028371

Abstract Article PDF–1.9M

Select item 55227294.

An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase

Ran Furman, Oleg V. Tsodikov, Yuri I. Wolf, Irina Artsimovitch

J Mol Biol. Author manuscript; available in PMC 2017 Jul 23.

Published in final edited form as: J Mol Biol. 2013 Jan 9; 425(1): 82–93. Published online 2012 Nov 9. doi: 10.1016/j.jmb.2012.11.008

PMCID:: PMC5522729

Abstract Article PDF–2.5M

Select item 54194685.

A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli

Mikhail G. Bubunenko, Carolyn B. Court, Alison J. Rattray, Deanna R. Gotte, Maria L. Kireeva, Jorge A. Irizarry-Caro, Xintian Li, Ding J. Jin, Donald L. Court, Jeffrey N. Strathern, Mikhail Kashlev

Genetics. 2017 May; 206(1): 179–187. Published online 2017 Mar 23. doi: 10.1534/genetics.116.198960

PMCID:: PMC5419468

Abstract Article PDF–798K

Select item 53209986.

Dynamics of GreB-RNA polymerase interaction allow a proofreading accessory protein to patrol for transcription complexes needing rescue

Larry E. Tetone, Larry J. Friedman, Melisa L. Osborne, Harini Ravi, Scotty Kyzer, Sarah K. Stumper, Rachel A. Mooney, Robert Landick, Jeff Gelles

Proc Natl Acad Sci U S A. 2017 Feb 14; 114(7): E1081–E1090. Published online 2017 Jan 30. doi: 10.1073/pnas.1616525114

PMCID:: PMC5320998

Abstract Article PDF–1.3M

Select item 33716037.

Recognition of a Human Arrest Site Is Conserved between RNA Polymerase II and Prokaryotic RNA Polymerases

John Mote, Jr., Daniel Reines

J Biol Chem. Author manuscript; available in PMC 2012 Jun 11.

Published in final edited form as: J Biol Chem. 1998 Jul 3; 273(27): 16843–16852. doi: 10.1074/jbc.273.27.16843

PMCID:: PMC3371603

Abstract Article PDF–1.9M

Select item 27910018.

Early Transcriptional Arrest at Escherichia coli rplN and ompX Promoters

Ekaterina Stepanova, Minshi Wang, Konstantin Severinov, Sergei Borukhov

J Biol Chem. 2009 Dec 18; 284(51): 35702–35713. Published online 2009 Oct 23. doi: 10.1074/jbc.M109.053983

PMCID:: PMC2791001

Abstract Article PDF–4.0M

Select item 26523939.

Transcriptional Infidelity Promotes Heritable Phenotypic Change in a Bistable Gene Network

Alasdair J. E Gordon, Jennifer A Halliday, Matthew D Blankschien, Philip A Burns, Fumio Yatagai, Christophe Herman

PLoS Biol. 2009 Feb; 7(2): e1000044. Published online 2009 Feb 24. doi: 10.1371/journal.pbio.1000044

PMCID:: PMC2652393

Abstract Article PDF–225K

Select item 261303110.

TraR, a Homolog of a RNAP Secondary Channel Interactor, Modulates Transcription

Matthew D. Blankschien, Katarzyna Potrykus, Elicia Grace, Abha Choudhary, Daniel Vinella, Michael Cashel, Christophe Herman

PLoS Genet. 2009 Jan; 5(1): e1000345. Published online 2009 Jan 16. doi: 10.1371/journal.pgen.1000345

PMCID:: PMC2613031

Abstract Article PDF–409K

Select item 252828211.

Initial transcribed sequence mutations specifically affect promoter escape properties

Lilian M. Hsu, Ingrid M. Cobb, Jillian R. Ozmore, Maureen Khoo, Grace Nahm, Lulin Xia, Yeran Bao, Colette Ahn

Biochemistry. Author manuscript; available in PMC 2008 Sep 3.

Published in final edited form as: Biochemistry. 2006 Jul 25; 45(29): 8841–8854. doi: 10.1021/bi060247u

PMCID:: PMC2528282

Abstract Article PDF–1.5M

Select item 224739412.

The carboxy-terminal coiled-coil of the RNA polymerase β′-subunit is the main binding site for Gre factors

Marina N Vassylyeva, Vladimir Svetlov, Altaira D Dearborn, Sergiy Klyuyev, Irina Artsimovitch, Dmitry G Vassylyev

EMBO Rep. 2007 Nov; 8(11): 1038–1043. Published online 2007 Oct 5. doi: 10.1038/sj.embor.7401079

PMCID:: PMC2247394

Abstract Article PDF–421K

Select item 183992813.

Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase

Steven T. Rutherford, Justin J. Lemke, Catherine E. Vrentas, Tamas Gaal, Wilma Ross, Richard L. Gourse

J Mol Biol. Author manuscript; available in PMC 2007 Mar 30.

Published in final edited form as: J Mol Biol. 2007 Mar 2; 366(4): 1243–1257. Published online 2006 Dec 12. doi: 10.1016/j.jmb.2006.12.013

PMCID:: PMC1839928

Abstract Article PDF–1.0M

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 141358715.

A pathway branching in transcription initiation in Escherichia coli

Motoki Susa, Tomoko Kubori, Nobuo Shimamoto

Mol Microbiol. 2006 Mar; 59(6): 1807–1817. Published online 2006 Jan 30. doi: 10.1111/j.1365-2958.2006.05058.x

PMCID:: PMC1413587

Abstract Article PDF–394K

Select item 140149316.

Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus

Anna A. Perederina, Marina N. Vassylyeva, Igor A. Berezin, Vladimir Svetlov, Irina Artsimovitch, Dmitry G. Vassylyev

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Jan 1; 62(Pt 1): 44–46. Published online 2005 Dec 16. doi: 10.1107/S1744309105040297

PMCID:: PMC1401493

Abstract Article PDF–225K

Select item 132520017.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405