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Select item 73170451.

Interactions between DksA and Stress-Responsive Alternative Sigma Factors Control Inorganic Polyphosphate Accumulation in Escherichia coli

Michael J. Gray

J Bacteriol. 2020 Jul; 202(14): e00133-20. Prepublished online 2020 Apr 27. Published online 2020 Jun 25. doi: 10.1128/JB.00133-20

PMCID:: PMC7317045

Abstract Article PDF–694K

Select item 55058682.

Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation

Robert Glyde, Fuzhou Ye, Vidya Chandran Darbari, Nan Zhang, Martin Buck, Xiaodong Zhang

Mol Cell. 2017 Jul 6; 67(1): 106–116.e4. doi: 10.1016/j.molcel.2017.05.010

PMCID:: PMC5505868

Abstract Article

Select item 45911213.

Genome-Scale Mapping of Escherichia coli σ⁵⁴ Reveals Widespread, Conserved Intragenic Binding

Richard P. Bonocora, Carol Smith, Pascal Lapierre, Joseph T. Wade

PLoS Genet. 2015 Oct; 11(10): e1005552. Published online 2015 Oct 1. doi: 10.1371/journal.pgen.1005552

PMCID:: PMC4591121

Abstract Article PDF–3.0M

Select item 42871784.

σ^N-dependent control of acid resistance and the locus of enterocyte effacement in enterohemorrhagic Escherichia coli is activated by acetyl phosphate in a manner requiring flagellar regulator FlhDC and the σ^S antagonist FliZ

Avishek Mitra, Pamela A Fay, Khoury W Vendura, Zimrisha Alla, Ronan K Carroll, Lindsey N Shaw, James T Riordan

Microbiologyopen. 2014 Aug; 3(4): 497–512. Published online 2014 Jun 16. doi: 10.1002/mbo3.183

PMCID:: PMC4287178

Abstract Article PDF–1.7M

Select item 36837915.

RNA polymerase approaches its promoter without long-range sliding along DNA

Larry J. Friedman, Jeffrey P. Mumm, Jeff Gelles

Proc Natl Acad Sci U S A. 2013 Jun 11; 110(24): 9740–9745. Published online 2013 May 29. doi: 10.1073/pnas.1300221110

PMCID:: PMC3683791

Abstract Article PDF–697K

Select item 31629346.

Comparative analyses imply that the enigmatic sigma factor 54 is a central controller of the bacterial exterior

Christof Francke, Tom Groot Kormelink, Yanick Hagemeijer, Lex Overmars, Vincent Sluijter, Roy Moezelaar, Roland J Siezen

BMC Genomics. 2011; 12: 385. Published online 2011 Aug 1. doi: 10.1186/1471-2164-12-385

PMCID:: PMC3162934

Abstract Article PDF–1.6M

Select item 29417297.

Nitric oxide-responsive interdomain regulation targets the σ⁵⁴-interaction surface in the enhancer binding protein NorR

Matthew Bush, Tamaswati Ghosh, Nicholas Tucker, Xiaodong Zhang, Ray Dixon

Mol Microbiol. 2010 Sep; 77(5): 1278–1288. doi: 10.1111/j.1365-2958.2010.07290.x

PMCID:: PMC2941729

Abstract Article PDF–757K

Select item 28313298.

Promoter and regulon analysis of nitrogen assimilation factor, σ⁵⁴, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis

Kai Zhao, Mingzhu Liu, Richard R. Burgess

Nucleic Acids Res. 2010 Mar; 38(4): 1273–1283. Published online 2009 Dec 6. doi: 10.1093/nar/gkp1123

PMCID:: PMC2831329

Abstract Article PDF–1.0M

Select item 28313039.

Essential roles of three enhancer sites in σ⁵⁴-dependent transcription by the nitric oxide sensing regulatory protein NorR

Nicholas P. Tucker, Tamaswati Ghosh, Matthew Bush, Xiaodong Zhang, Ray Dixon

Nucleic Acids Res. 2010 Mar; 38(4): 1182–1194. Published online 2009 Dec 2. doi: 10.1093/nar/gkp1065

PMCID:: PMC2831303

Abstract Article PDF–5.0M

Select item 273191610.

Comparative analysis of activator-Eσ⁵⁴ complexes formed with nucleotide-metal fluoride analogues

Patricia C. Burrows, Nicolas Joly, B. Tracy Nixon, Martin Buck

Nucleic Acids Res. 2009 Aug; 37(15): 5138–5150. Published online 2009 Jun 24. doi: 10.1093/nar/gkp541

PMCID:: PMC2731916

Abstract Article PDF–5.6M

Select item 269275411.

Regulation and action of the bacterial enhancer-binding protein AAA+ domains

Baoyu Chen, Tatyana A. Sysoeva, Saikat Chowdhury, B. Tracy Nixon

Biochem Soc Trans. Author manuscript; available in PMC 2009 Jun 8.

Published in final edited form as: Biochem Soc Trans. 2008 Feb; 36(Pt 1): 89–93. doi: 10.1042/BST0360089

PMCID:: PMC2692754

Abstract Article PDF–1.1M

Select item 195191012.

Interactions of the Antizyme AtoC with Regulatory Elements of the Escherichia coli atoDAEB Operon

Meropi K. Matta, Efthimia E. Lioliou, Cynthia H. Panagiotidis, Dimitrios A. Kyriakidis, Christos A. Panagiotidis

J Bacteriol. 2007 Sep; 189(17): 6324–6332. Published online 2007 Jul 6. doi: 10.1128/JB.00214-07

PMCID:: PMC1951910

Abstract Article PDF–391K

Select item 189937413.

Enhancement of the Synthesis of RpoN, Cra, and H-NS by Polyamines at the Level of Translation in Escherichia coli Cultured with Glucose and Glutamate

Yusuke Terui, Kyohei Higashi, Shiho Taniguchi, Ai Shigemasa, Kazuhiro Nishimura, Kaneyoshi Yamamoto, Keiko Kashiwagi, Akira Ishihama, Kazuei Igarashi

J Bacteriol. 2007 Mar; 189(6): 2359–2368. Published online 2007 Jan 12. doi: 10.1128/JB.01562-06

PMCID:: PMC1899374

Abstract Article PDF–440K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 150214015.

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks

David J Reiss, Nitin S Baliga, Richard Bonneau

BMC Bioinformatics. 2006; 7: 280. Published online 2006 Jun 2. doi: 10.1186/1471-2105-7-280

PMCID:: PMC1502140

Abstract Article PDF–1.1M

Select item 132520016.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405