PMC Links for GEO Profiles (Select 32388453) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 36647926.

Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits α, ε, θ and β reveals a highly flexible arrangement of the proofreading domain

Kiyoshi Ozawa, Nicholas P. Horan, Andrew Robinson, Hiromasa Yagi, Flynn R. Hill, Slobodan Jergic, Zhi-Qiang Xu, Karin V. Loscha, Nan Li, Moeava Tehei, Aaron J. Oakley, Gottfried Otting, Thomas Huber, Nicholas E. Dixon

Nucleic Acids Res. 2013 May; 41(10): 5354–5367. Published online 2013 Apr 10. doi: 10.1093/nar/gkt162

PMCID:: PMC3664792

Abstract Article PDF–6.3M

Select item 36426797.

Architecture of the Pol III–clamp–exonuclease complex reveals key roles of the exonuclease subunit in processive DNA synthesis and repair

Ana Toste Rêgo, Andrew N Holding, Helen Kent, Meindert H Lamers

EMBO J. 2013 May 2; 32(9): 1334–1343. Published online 2013 Apr 2. doi: 10.1038/emboj.2013.68

PMCID:: PMC3642679

Abstract Article PDF–923K

Select item 36426768.

A direct proofreader–clamp interaction stabilizes the Pol III replicase in the polymerization mode

Slobodan Jergic, Nicholas P Horan, Mohamed M Elshenawy, Claire E Mason, Thitima Urathamakul, Kiyoshi Ozawa, Andrew Robinson, Joris M H Goudsmits, Yao Wang, Xuefeng Pan, Jennifer L Beck, Antoine M van Oijen, Thomas Huber, Samir M Hamdan, Nicholas E Dixon

EMBO J. 2013 May 2; 32(9): 1322–1333. Published online 2013 Feb 22. doi: 10.1038/emboj.2012.347

PMCID:: PMC3642676

Abstract Article PDF–1.2M

Select item 27318969.

Conditional gene silencing of multiple genes with antisense RNAs and generation of a mutator strain of Escherichia coli

Nobutaka Nakashima, Tomohiro Tamura

Nucleic Acids Res. 2009 Aug; 37(15): e103. Published online 2009 Jun 10. doi: 10.1093/nar/gkp498

PMCID:: PMC2731896

Abstract Article PDF–385K

Select item 265212310.

Reaction mechanism of the ε subunit of E. coli DNA polymerase III: Insights into active site metal coordination and catalytically significant residues

G. Andrés Cisneros, Lalith Perera, Roel M. Schaaper, Lars C. Pedersen, Robert E. London, Lee G. Pedersen, Thomas A. Darden

J Am Chem Soc. Author manuscript; available in PMC 2010 Feb 4.

Published in final edited form as: J Am Chem Soc. 2009 Feb 4; 131(4): 1550–1556. doi: 10.1021/ja8082818

PMCID:: PMC2652123

Abstract Article PDF–1.9M

Select item 252819011.

The proofreading exonuclease subunit ε of Escherichia coli DNA polymerase III is tethered to the polymerase subunit α via a flexible linker

Kiyoshi Ozawa, Slobodan Jergic, Ah Young Park, Nicholas E. Dixon, Gottfried Otting

Nucleic Acids Res. 2008 Sep; 36(15): 5074–5082. Published online 2008 Jul 28. doi: 10.1093/nar/gkn489

PMCID:: PMC2528190

Abstract Article PDF–1.4M

Select item 249325712.

The ɛ Subunit of DNA Polymerase III Is Involved in the Nalidixic Acid-Induced SOS Response in Escherichia coli

Jennifer Reineke Pohlhaus, David T. Long, Erin O'Reilly, Kenneth N. Kreuzer

J Bacteriol. 2008 Aug; 190(15): 5239–5247. Published online 2008 Jun 6. doi: 10.1128/JB.00173-08

PMCID:: PMC2493257

Abstract Article PDF–291K

Select item 245923913.

Resolution of Converging Replication Forks by RecQ and Topoisomerase III

Catherine Suski, Kenneth J. Marians

Mol Cell. Author manuscript; available in PMC 2009 Jun 20.

Published in final edited form as: Mol Cell. 2008 Jun 20; 30(6): 779–789. doi: 10.1016/j.molcel.2008.04.020

PMCID:: PMC2459239

Abstract Article PDF–1.6M

Select item 228659314.

Application of electrospray ionization mass spectrometry to study the hydrophobic interaction between the ɛ and θ subunits of DNA polymerase III

Rajesh Gupta, Samir M. Hamdan, Nicholas E. Dixon, Margaret M. Sheil, Jennifer L. Beck

Protein Sci. 2004 Nov; 13(11): 2878–2887. doi: 10.1110/ps.04889604

PMCID:: PMC2286593

Abstract Article PDF–155K

Select item 189304915.

Proofreading and Secondary Structure Processing Determine the Orientation Dependence of CAG·CTG Trinucleotide Repeat Instability in Escherichia coli

Rabaab Zahra, John K. Blackwood, Jill Sales, David R. F. Leach

Genetics. 2007 May; 176(1): 27–41. doi: 10.1534/genetics.106.069724

PMCID:: PMC1893049

Abstract Article PDF–1.2M

Select item 187672016.

Structure of the Escherichia coli DNA Polymerase III ε-HOT Proofreading Complex

Thomas W. Kirby, Scott Harvey, Eugene F. DeRose, Sergey Chalov, Anna K. Chikova, Fred W. Perrino, Roel M. Schaaper, Robert E. London, Lars C. Pedersen

J Biol Chem. Author manuscript; available in PMC 2007 May 24.

Published in final edited form as: J Biol Chem. 2006 Dec 15; 281(50): 38466–38471. Published online 2006 Sep 13. doi: 10.1074/jbc.M606917200

PMCID:: PMC1876720

Abstract Article PDF–744K

Select item 168148117.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 154008118.

Mutator and Antimutator Effects of the Bacteriophage P1 hot Gene Product

Anna K. Chikova, Roel M. Schaaper

J Bacteriol. 2006 Aug; 188(16): 5831–5838. doi: 10.1128/JB.00630-06

PMCID:: PMC1540081

Abstract Article PDF–230K

Select item 148295319.

Structure of the θ Subunit of Escherichia coli DNA Polymerase III in Complex with the ɛ Subunit

Max A. Keniry, Ah Young Park, Elisabeth A. Owen, Samir M. Hamdan, Guido Pintacuda, Gottfried Otting, Nicholas E. Dixon

J Bacteriol. 2006 Jun; 188(12): 4464–4473. doi: 10.1128/JB.01992-05

PMCID:: PMC1482953

Abstract Article PDF–583K

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405