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Items: 1 to 20 of 30

1.
A Second-generation Protein–Protein Interaction Network of Helicobacter pylori
Roman Häuser, Arnaud Ceol, Seesandra V. Rajagopala, Roberto Mosca, Gabriella Siszler, Nadja Wermke, Patricia Sikorski, Frank Schwarz, Matthias Schick, Stefan Wuchty, Patrick Aloy, Peter Uetz
Mol Cell Proteomics. 2014 May; 13(5): 1318–1329. Published online 2014 Mar 13. doi: 10.1074/mcp.O113.033571
PMCID:
PMC4014287
ArticlePDF–2.2M
2.
Transfer-messenger RNA-SmpB Protein Regulates Ribonuclease R Turnover by Promoting Binding of HslUV and Lon Proteases
Wenxing Liang, Murray P. Deutscher
J Biol Chem. 2012 Sep 28; 287(40): 33472–33479. Published online 2012 Aug 9. doi: 10.1074/jbc.M112.375287
PMCID:
PMC3460448
ArticlePDF–2.4M
3.
Stepwise Activity of ClpY (HslU) Mutants in the Processive Degradation of Escherichia coli ClpYQ (HslUV) Protease Substrates
Fan-Ching Hsieh, Chien-Teh Chen, Yu-Ting Weng, Sheng-Shiang Peng, Yu-Chun Chen, Ling-Yi Huang, Hui-Ting Hu, Yew-Long Wu, Nai-Chun Lin, Whei-Fen Wu
J Bacteriol. 2011 Oct; 193(19): 5465–5476. doi: 10.1128/JB.05128-11
PMCID:
PMC3187428
ArticlePDF–1.6M
4.
HslVU ATP-dependent Protease Utilizes Maximally Six among Twelve Threonine Active Sites during Proteolysis
Jung Wook Lee, Eunyong Park, Min Sun Jeong, Young Joo Jeon, Soo Hyun Eom, Jae Hong Seol, Chin Ha Chung
J Biol Chem. 2009 Nov 27; 284(48): 33475–33484. Published online 2009 Oct 1. doi: 10.1074/jbc.M109.045807
PMCID:
PMC2785192
ArticlePDF–3.0M
5.
ATP-dependent Proteases Differ Substantially in Their Ability to Unfold Globular Proteins
Prakash Koodathingal, Neil E. Jaffe, Daniel A. Kraut, Sumit Prakash, Susan Fishbain, Christophe Herman, Andreas Matouschek
J Biol Chem. 2009 Jul 10; 284(28): 18674–18684. Published online 2009 Apr 21. doi: 10.1074/jbc.M900783200
PMCID:
PMC2707231
ArticlePDF–1.2M
6.
Characterization of the Escherichia coli ClpY (HslU) Substrate Recognition Site in the ClpYQ (HslUV) Protease Using the Yeast Two-Hybrid System
Hsiang-Yun Lien, Ru-Shan Shy, Sheng-Shiang Peng, Yuei-Long Wu, Yu-Ting Weng, Hsuan-He Chen, Pin-Chih Su, Wei-Fu Ng, Yu-Chun Chen, Pei-Yi Chang, Whei-Fen Wu
J Bacteriol. 2009 Jul; 191(13): 4218–4231. Published online 2009 Apr 24. doi: 10.1128/JB.00089-09
PMCID:
PMC2698502
ArticlePDF–1.6M
7.
Regulation of clpQ+Y+ (hslV+U+) Gene Expression in Escherichia coli
Hsiang-Yun Lien, Chien-Hung Yu, Chung-Ming Liou, Whi Fin Wu
Open Microbiol J. 2009; 3: 29–39. Published online 2009 Mar 17. doi: 10.2174/1874285800903010029
PMCID:
PMC2681174
ArticlePDF–603K
8.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
ArticlePDF–1.0M
9.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
ArticlePDF–141K
10.
Regulon and promoter analysis of the E. coli heat-shock factor, σ32, reveals a multifaceted cellular response to heat stress
Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius
Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206
PMCID:
PMC1522074
ArticlePDF–548K
11.
MEROPS: the peptidase database
Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D270–D272. Published online 2005 Dec 28. doi: 10.1093/nar/gkj089
PMCID:
PMC1347452
ArticlePDF–55K
12.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
ArticlePDF–204K
13.
Degradation of mutant initiator protein DnaA204 by proteases ClpP, ClpQ and Lon is prevented when DNA is SeqA-free.
Monika Slominska, Anne Wahl, Grzegorz Wegrzyn, Kirsten Skarstad
Biochem J. 2003 Mar 15; 370(Pt 3): 867–871. doi: 10.1042/BJ20021161
PMCID:
PMC1223233
SummaryPDF–123K
14.
Analysis of the Escherichia coli Alp Phenotype: Heat Shock Induction in ssrA Mutants
Hussain Munavar, YanNing Zhou, Susan Gottesman
J Bacteriol. 2005 Jul; 187(14): 4739–4751. doi: 10.1128/JB.187.14.4739-4751.2005
PMCID:
PMC1169506
ArticlePDF–399K
15.
Defense against Protein Carbonylation by DnaK/DnaJ and Proteases of the Heat Shock Regulon
Åsa Fredriksson, Manuel Ballesteros, Sam Dukan, Thomas Nyström
J Bacteriol. 2005 Jun; 187(12): 4207–4213. doi: 10.1128/JB.187.12.4207-4213.2005
PMCID:
PMC1151714
ArticlePDF–237K
16.
Identification and characterization of HsIV HsIU (ClpQ ClpY) proteins involved in overall proteolysis of misfolded proteins in Escherichia coli.
D Missiakas, F Schwager, J M Betton, C Georgopoulos, S Raina
EMBO J. 1996 Dec 16; 15(24): 6899–6909.
PMCID:
PMC452516
ArticlePDF–2.4M
17.
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
G Plunkett, 3rd, V Burland, D L Daniels, F R Blattner
Nucleic Acids Res. 1993 Jul 25; 21(15): 3391–3398. doi: 10.1093/nar/21.15.3391
PMCID:
PMC331436
ArticlePDF–1.4M
18.
Adaptation of Escherichia coli to the uncoupler of oxidative phosphorylation 2,4-dinitrophenol.
D J Gage, F C Neidhardt
J Bacteriol. 1993 Nov; 175(21): 7105–7108. doi: 10.1128/jb.175.21.7105-7108.1993
PMCID:
PMC206841
ArticlePDF–823K
19.
Characterization of twenty-six new heat shock genes of Escherichia coli.
S E Chuang, F R Blattner
J Bacteriol. 1993 Aug; 175(16): 5242–5252. doi: 10.1128/jb.175.16.5242-5252.1993
PMCID:
PMC204992
ArticlePDF–2.7M
20.
Synergistic roles of HslVU and other ATP-dependent proteases in controlling in vivo turnover of sigma32 and abnormal proteins in Escherichia coli.
M Kanemori, K Nishihara, H Yanagi, T Yura
J Bacteriol. 1997 Dec; 179(23): 7219–7225. doi: 10.1128/jb.179.23.7219-7225.1997
PMCID:
PMC179669
SummaryPDF–889K

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