PMC Links for GEO Profiles (Select 32392365) - PMC

Select item 43303621.

The ATP-mediated formation of the YgjD–YeaZ–YjeE complex is required for the biosynthesis of tRNA t⁶A in Escherichia coli

Wenhua Zhang, Bruno Collinet, Ludovic Perrochia, Dominique Durand, Herman van Tilbeurgh

Nucleic Acids Res. 2015 Feb 18; 43(3): 1804–1817. Published online 2015 Jan 10. doi: 10.1093/nar/gku1397

PMCID:: PMC4330362

Abstract Article PDF–4.1M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 33401673.

Biosynthesis of Threonylcarbamoyl Adenosine (t⁶A), a Universal tRNA Nucleoside

Christopher Deutsch, Basma El Yacoubi, Valérie de Crécy-Lagard, Dirk Iwata-Reuyl

J Biol Chem. 2012 Apr 20; 287(17): 13666–13673. Published online 2012 Feb 29. doi: 10.1074/jbc.M112.344028

PMCID:: PMC3340167

Abstract Article PDF–1010K

Select item 27157074.

Conserved Network of Proteins Essential for Bacterial Viability

Jennifer I. Handford, Bérengère Ize, Grant Buchanan, Gareth P. Butland, Jack Greenblatt, Andrew Emili, Tracy Palmer

J Bacteriol. 2009 Aug; 191(15): 4732–4749. Published online 2009 Apr 17. doi: 10.1128/JB.00136-09

PMCID:: PMC2715707

Abstract Article PDF–2.6M

Select item 27157055.

Grasping at Shadows: Revealing the Elusive Nature of Essential Genes

Tarek Msadek

J Bacteriol. 2009 Aug; 191(15): 4701–4704. Published online 2009 May 22. doi: 10.1128/JB.00572-09

PMCID:: PMC2715705

Article PDF–420K

Select item 26726146.

Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins

Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili

PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096

PMCID:: PMC2672614

Abstract Article

Select item 18558407.

Isolation of the rstA Gene as a Multicopy Suppressor of YjeE, an Essential ATPase of Unknown Function in Escherichia coli

Tracey L. Campbell, Claudia S. Ederer, Abdellah Allali-Hassani, Eric D. Brown

J Bacteriol. 2007 Apr; 189(8): 3318–3321. Published online 2007 Feb 9. doi: 10.1128/JB.00131-06

PMCID:: PMC1855840

Abstract Article PDF–175K

Select item 16814828.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 16814819.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520010.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 113414311.

Probing the active site of YjeE: a vital Escherichia coli protein of unknown function

Abdellah Allali-Hassani, Tracey L. Campbell, Andy Ho, Jeffrey W. Schertzer, Eric D. Brown

Biochem J. 2004 Dec 15; 384(Pt 3): 577–584. Prepublished online 2004 Aug 23. Published online 2004 Dec 7. doi: 10.1042/BJ20041082

PMCID:: PMC1134143

Abstract Article PDF–476K

Select item 30699712.

Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.

V Burland, G Plunkett, 3rd, H J Sofia, D L Daniels, F R Blattner

Nucleic Acids Res. 1995 Jun 25; 23(12): 2105–2119. doi: 10.1093/nar/23.12.2105

PMCID:: PMC306997

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