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Items: 1 to 20 of 48

1.
Comparative interactome analysis of the PRE DNA-binding factors: purification of the Combgap-, Zeste-, Psq-, and Adf1-associated proteins
Darya Chetverina, Nadezhda E. Vorobyeva, Marina Yu. Mazina, Lika V. Fab, Dmitry Lomaev, Alexandra Golovnina, Vladic Mogila, Pavel Georgiev, Rustam H. Ziganshin, Maksim Erokhin
Cell Mol Life Sci. 2022 Jul; 79(7): 353. Published online 2022 Jun 9. doi: 10.1007/s00018-022-04383-2
PMCID:
PMC11072172
AbstractArticlePDF–6.3M
2.
Analysis of the chromatin landscape and RNA polymerase II binding at SIN3-regulated genes
Imad Soukar, Anindita Mitra, Lori A. Pile
Biol Open. 2023 Nov 15; 12(11): bio060026. Published online 2023 Nov 10. doi: 10.1242/bio.060026
PMCID:
PMC10651107
AbstractArticlePDF–8.9M
3.
Assessment of the roles of Spt5-nucleic acid contacts in promoter proximal pausing of RNA polymerase II
Roberta Dollinger, Eilene B. Deng, Josie Schultz, Sharon Wu, Haley R. Deorio, David S. Gilmour
J Biol Chem. 2023 Sep; 299(9): 105106. Published online 2023 Jul 28. doi: 10.1016/j.jbc.2023.105106
PMCID:
PMC10482750
AbstractArticlePDF–3.9M
4.
The NELF pausing checkpoint mediates the functional divergence of Cdk9
Michael DeBerardine, Gregory T. Booth, Philip P. Versluis, John T. Lis
Nat Commun. 2023; 14: 2762. Published online 2023 May 13. doi: 10.1038/s41467-023-38359-y
PMCID:
PMC10182999
AbstractArticlePDF–2.5M
5.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
6.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
7.
NELF‐A controls Drosophila healthspan by regulating heat‐shock protein‐mediated cellular protection and heterochromatin maintenance
Zhen‐Kai Ngian, Wei‐Qi Lin, Chin‐Tong Ong
Aging Cell. 2021 May; 20(5): e13348. Published online 2021 Mar 31. doi: 10.1111/acel.13348
Correction in:
Aging Cell. 2022 Feb; 21(2): e13547.
PMCID:
PMC8135010
AbstractArticlePDF–2.4M
8.
The negative elongation factor NELF promotes induced transcriptional response of Drosophila ecdysone-dependent genes
Marina Yu. Mazina, Elena V. Kovalenko, Nadezhda E. Vorobyeva
Sci Rep. 2021; 11: 172. Published online 2021 Jan 8. doi: 10.1038/s41598-020-80650-1
PMCID:
PMC7794308
AbstractArticlePDF–5.5M
9.
Promoter Proximal Pausing Limits Tumorous Growth Induced by the Yki Transcription Factor in Drosophila
Sanket Nagarkar, Ruchi Wasnik, Pravallika Govada, Stephen Cohen, L. S. Shashidhara
Genetics. 2020 Sep; 216(1): 67–77. Published online 2020 Jul 30. doi: 10.1534/genetics.120.303419
PMCID:
PMC7463282
AbstractArticlePDF–2.1M
10.
Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila
Yuankai Dong, S. V. Satya Prakash Avva, Mukesh Maharjan, Janice Jacobi, Craig M. Hart
Genetics. 2020 May; 215(1): 89–101. Published online 2020 Mar 16. doi: 10.1534/genetics.120.303144
PMCID:
PMC7198264
AbstractArticlePDF–1.3M
11.
Proximity-dependent biotin labelling reveals CP190 as an EcR/Usp molecular partner
Marina Yu. Mazina, Rustam H. Ziganshin, Mikhail D. Magnitov, Anton K. Golovnin, Nadezhda E. Vorobyeva
Sci Rep. 2020; 10: 4793. Published online 2020 Mar 16. doi: 10.1038/s41598-020-61514-0
PMCID:
PMC7075897
AbstractArticlePDF–2.9M
12.
Drosophila PSI controls circadian period and the phase of circadian behavior under temperature cycle via tim splicing
Lauren E Foley, Jinli Ling, Radhika Joshi, Naveh Evantal, Sebastian Kadener, Patrick Emery
eLife. 2019; 8: e50063. Published online 2019 Nov 8. doi: 10.7554/eLife.50063
PMCID:
PMC6890465
AbstractArticlePDF–3.0M
13.
Loss of PAFAH1B2 Reduces Amyloid-β Generation by Promoting the Degradation of Amyloid Precursor Protein C-Terminal Fragments
Richard M. Page, Anna Münch, Thomas Horn, Peer-Hendrik Kuhn, Alessio Colombo, Orly Reiner, Michael Boutros, Harald Steiner, Stefan F. Lichtenthaler, Christian Haass
J Neurosci. 2012 Dec 12; 32(50): 18204–18214. doi: 10.1523/JNEUROSCI.2681-12.2012
PMCID:
PMC6621731
AbstractArticlePDF–2.0M
14.
The RNA Polymerase II Core Promoter in Drosophila
Long Vo Ngoc, George A. Kassavetis, James T. Kadonaga
Genetics. 2019 May; 212(1): 13–24. Published online 2019 Mar 6. doi: 10.1534/genetics.119.302021
PMCID:
PMC6499525
AbstractArticlePDF–866K
15.
The Drosophila CLAMP protein associates with diverse proteins on chromatin
Jennifer A. Urban, John M. Urban, Guray Kuzu, Erica N. Larschan
PLoS One. 2017; 12(12): e0189772. Published online 2017 Dec 27. doi: 10.1371/journal.pone.0189772
PMCID:
PMC5744976
AbstractArticlePDF–3.7M
16.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
17.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
18.
GAGA factor, a positive regulator of global gene expression, modulates transcriptional pausing and organization of upstream nucleosomes
Shih-Ying Tsai, Yuh-Long Chang, Krishna B. S. Swamy, Ruei-Lin Chiang, Der-Hwa Huang
Epigenetics Chromatin. 2016; 9: 32. Published online 2016 Jul 27. doi: 10.1186/s13072-016-0082-4
PMCID:
PMC4962548
AbstractArticlePDF–8.9M
19.
Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing
Alborz Mazloomian, Irmtraud M Meyer
RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703
PMCID:
PMC4829317
AbstractArticlePDF–609K
20.
Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet
Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata
Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371
PMCID:
PMC4788116
AbstractArticlePDF–4.7M

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