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Items: 1 to 20 of 34

1.
Bone morphogenetic protein signaling: the pathway and its regulation
Takuya Akiyama, Laurel A Raftery, Kristi A Wharton
Genetics. 2024 Feb; 226(2): iyad200. Published online 2023 Dec 20. doi: 10.1093/genetics/iyad200
PMCID:
PMC10847725
AbstractArticlePDF–6.8M
2.
Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5′ to 3′ degradation
Lauren Forbes Beadle, Jennifer C. Love, Yuliya Shapovalova, Artem Artemev, Magnus Rattray, Hilary L. Ashe
PLoS Biol. 2023 Jan; 21(1): e3001956. Published online 2023 Jan 17. doi: 10.1371/journal.pbio.3001956
PMCID:
PMC9882958
AbstractArticlePDF–3.3M
3.
Drosophila Larval Models of Invasive Tumorigenesis for In Vivo Studies on Tumour/Peripheral Host Tissue Interactions during Cancer Cachexia
Joseph A. Hodgson, Jean-Philippe Parvy, Yachuan Yu, Marcos Vidal, Julia B. Cordero
Int J Mol Sci. 2021 Aug; 22(15): 8317. Published online 2021 Aug 2. doi: 10.3390/ijms22158317
PMCID:
PMC8347517
AbstractArticlePDF–6.0M
4.
Genome-Wide Transcriptional Analysis of Drosophila Larvae Infected by Entomopathogenic Nematodes Shows Involvement of Complement, Recognition and Extracellular Matrix Proteins
Badrul Arefin, Lucie Kucerova, Pavel Dobes, Robert Markus, Hynek Strnad, Zhi Wang, Pavel Hyrsl, Michal Zurovec, Ulrich Theopold
J Innate Immun. 2014 Feb; 6(2): 192–204. Published online 2013 Aug 27. doi: 10.1159/000353734
PMCID:
PMC6741570
AbstractArticlePDF–783K
5.
A gene-specific T2A-GAL4 library for Drosophila
Pei-Tseng Lee, Jonathan Zirin, Oguz Kanca, Wen-Wen Lin, Karen L Schulze, David Li-Kroeger, Rong Tao, Colby Devereaux, Yanhui Hu, Verena Chung, Ying Fang, Yuchun He, Hongling Pan, Ming Ge, Zhongyuan Zuo, Benjamin E Housden, Stephanie E Mohr, Shinya Yamamoto, Robert W Levis, Allan C Spradling, Norbert Perrimon, Hugo J Bellen
eLife. 2018; 7: e35574. Published online 2018 Mar 22. doi: 10.7554/eLife.35574
PMCID:
PMC5898912
AbstractArticlePDF–4.9M
6.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
7.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
8.
Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster
Peter A. Combs, Michael B. Eisen
Version 1. F1000Res. 2017; 6: 41. Published online 2017 Jan 12. doi: 10.12688/f1000research.9720.1
PMCID:
PMC5325077
AbstractArticlePDF–10M
9.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
10.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
11.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
13.
Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library
Nick Lowe, Johanna S. Rees, John Roote, Ed Ryder, Irina M. Armean, Glynnis Johnson, Emma Drummond, Helen Spriggs, Jenny Drummond, Jose P. Magbanua, Huw Naylor, Bénédicte Sanson, Rebecca Bastock, Sven Huelsmann, Vitor Trovisco, Matthias Landgraf, Seymour Knowles-Barley, J. Douglas Armstrong, Helen White-Cooper, Celia Hansen, Roger G. Phillips, The UK Drosophila Protein Trap Screening Consortium, Kathryn S. Lilley, Steven Russell, Daniel St Johnston
Development. 2014 Oct; 141(20): 3994–4005. doi: 10.1242/dev.111054
PMCID:
PMC4197710
AbstractArticle
14.
Strategies for Exploring TGF-β Signaling in Drosophila
Aidan J. Peterson, Michael B. O’Connor
Methods. Author manuscript; available in PMC 2015 Jun 15.
Published in final edited form as: Methods. 2014 Jun 15; 68(1): 183–193. Published online 2014 Mar 27. doi: 10.1016/j.ymeth.2014.03.016
PMCID:
PMC4057889
AbstractArticlePDF–626K
15.
Mechanisms of scaling in pattern formation
David M. Umulis, Hans G. Othmer
Development. 2013 Dec 15; 140(24): 4830–4843. doi: 10.1242/dev.100511
PMCID:
PMC3848184
AbstractArticle
16.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
17.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
18.
Comparison of Parallel High-Throughput RNA Sequencing Between Knockout of TDP-43 and Its Overexpression Reveals Primarily Nonreciprocal and Nonoverlapping Gene Expression Changes in the Central Nervous System of Drosophila
Dennis J. Hazelett, Jer-Cherng Chang, Daniel L. Lakeland, David B. Morton
G3 (Bethesda) 2012 Jul; 2(7): 789–802. Published online 2012 Jul 1. doi: 10.1534/g3.112.002998
PMCID:
PMC3385985
AbstractArticlePDF–1.3M
19.
Regulation of BMP activity and range in Drosophila wing development
Laurel A. Raftery, David M. Umulis
Curr Opin Cell Biol. Author manuscript; available in PMC 2013 Apr 1.
Published in final edited form as: Curr Opin Cell Biol. 2012 Apr; 24(2): 158–165. Published online 2011 Dec 5. doi: 10.1016/j.ceb.2011.11.004
PMCID:
PMC3320673
AbstractArticlePDF–861K
20.
In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry
Johanna S. Rees, Nick Lowe, Irina M. Armean, John Roote, Glynnis Johnson, Emma Drummond, Helen Spriggs, Edward Ryder, Steven Russell, Daniel St Johnston, Kathryn S. Lilley
Mol Cell Proteomics. 2011 Jun; 10(6): M110.002386. Published online 2011 Mar 29. doi: 10.1074/mcp.M110.002386
PMCID:
PMC3108830
AbstractArticlePDF–1.4M

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