PMC Links for GEO Profiles (Select 33134874) - PMC

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 62429634.

Systematic Analysis of SIN3 Histone Modifying Complex Components During Development

Valerie L. Barnes, Kelly A. Laity, Maksymilian Pilecki, Lori A. Pile

Sci Rep. 2018; 8: 17048. Published online 2018 Nov 19. doi: 10.1038/s41598-018-35093-0

PMCID:: PMC6242963

Abstract Article PDF–1.8M

Select item 61772575.

Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila

Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet

eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853

PMCID:: PMC6177257

Abstract Article PDF–4.9M

Select item 57078056.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890027.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 54061678.

Mobile-phone radiation-induced perturbation of gene-expression profiling, redox equilibrium and sporadic-apoptosis control in the ovary of Drosophila melanogaster

Areti K. Manta, Deppie Papadopoulou, Alexander P. Polyzos, Adamantia F. Fragopoulou, Aikaterini S. Skouroliakou, Dimitris Thanos, Dimitrios J. Stravopodis, Lukas H. Margaritis

Fly (Austin) 2017; 11(2): 75–95. Published online 2016 Dec 14. doi: 10.1080/19336934.2016.1270487

PMCID:: PMC5406167

Abstract Article PDF–1.4M

Select item 49428389.

The Nucleosome Remodeling and Deacetylase Complex NuRD Is Built from Preformed Catalytically Active Sub-modules

W. Zhang, A. Aubert, J.M. Gomez de Segura, M. Karuppasamy, S. Basu, A.S. Murthy, A. Diamante, T.A. Drury, J. Balmer, J. Cramard, A.A. Watson, D. Lando, S.F. Lee, M. Palayret, S.L. Kloet, A.H. Smits, M.J. Deery, M. Vermeulen, B. Hendrich, D. Klenerman, C. Schaffitzel, I. Berger, E.D. Laue

J Mol Biol. 2016 Jul 17; 428(14): 2931–2942. doi: 10.1016/j.jmb.2016.04.025

PMCID:: PMC4942838

Abstract Article PDF–1.1M

Select item 488965810.

mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster

Gildas Lepennetier, Francesco Catania

G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231

PMCID:: PMC4889658

Abstract Article PDF–1.5M

Select item 478811611.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 452833012.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832913.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 438152314.

A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

Claus Schertel, Monica Albarca, Claudia Rockel-Bauer, Nicholas W. Kelley, Johannes Bischof, Korneel Hens, Erik van Nimwegen, Konrad Basler, Bart Deplancke

Genome Res. 2015 Apr; 25(4): 514–523. doi: 10.1101/gr.181305.114

PMCID:: PMC4381523

Abstract Article PDF–700K

Select item 435288715.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 427152716.

Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution

Bryan A. Moyers, Jianzhi Zhang

Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286

Correction in:: Mol Biol Evol. 2016 Nov; 33(11): 3031.

PMCID:: PMC4271527

Abstract Article PDF–618K

Select item 378450417.

Histone Chaperone NAP1 Mediates Sister Chromatid Resolution by Counteracting Protein Phosphatase 2A

Yuri M. Moshkin, Cecile M. Doyen, Tsung-Wai Kan, Gillian E. Chalkley, Karen Sap, Karel Bezstarosti, Jeroen A. Demmers, Zeliha Ozgur, Wilfred F. J. van Ijcken, C. Peter Verrijzer

PLoS Genet. 2013 Sep; 9(9): e1003719. Published online 2013 Sep 26. doi: 10.1371/journal.pgen.1003719

PMCID:: PMC3784504

Abstract Article PDF–3.0M

Select item 353067718.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946719.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 314394020.

Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation

Vikki M. Weake, Jamie O. Dyer, Christopher Seidel, Andrew Box, Selene K. Swanson, Allison Peak, Laurence Florens, Michael P. Washburn, Susan M. Abmayr, Jerry L. Workman

Genes Dev. 2011 Jul 15; 25(14): 1499–1509. doi: 10.1101/gad.2046211

PMCID:: PMC3143940

Abstract Article PDF–1.1M

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