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Items: 1 to 20 of 37

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
3.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
4.
Elucidation of the interaction proteome of mitochondrial chaperone Hsp78 highlights its role in protein aggregation during heat stress
Witold Jaworek, Marc Sylvester, Giovanna Cenini, Wolfgang Voos
J Biol Chem. 2022 Oct; 298(10): 102494. Published online 2022 Sep 15. doi: 10.1016/j.jbc.2022.102494
PMCID:
PMC9574514
AbstractArticlePDF–1.9M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
Genes and lipids that impact uptake and assimilation of exogenous coenzyme Q in Saccharomyces cerevisiae
Lucía Fernández-del-Río, Miranda Kelly, Jaime Contreras, Michelle C. Bradley, Andrew M. James, Michael P. Murphy, Gregory S. Payne, Catherine F. Clarke
Free Radic Biol Med. Author manuscript; available in PMC 2021 Jul 19.
Published in final edited form as: Free Radic Biol Med. 2020 Jul 1; 154: 105–118. Published online 2020 May 6. doi: 10.1016/j.freeradbiomed.2020.04.029
PMCID:
PMC7611304
AbstractArticlePDF–2.0M
7.
Intragenic suppressor mutations of the COQ8 protein kinase homolog restore coenzyme Q biosynthesis and function in Saccharomyces cerevisiae
Agape M. Awad, Anish Nag, Nguyen V. B. Pham, Michelle C. Bradley, Nour Jabassini, Juan Nathaniel, Catherine F. Clarke
PLoS One. 2020; 15(6): e0234192. Published online 2020 Jun 1. doi: 10.1371/journal.pone.0234192
PMCID:
PMC7263595
AbstractArticlePDF–2.7M
8.
COQ11 deletion mitigates respiratory deficiency caused by mutations in the gene encoding the coenzyme Q chaperone protein Coq10
Michelle C. Bradley, Krista Yang, Lucía Fernández-del-Río, Jennifer Ngo, Anita Ayer, Hui S. Tsui, Noelle Alexa Novales, Roland Stocker, Orian S. Shirihai, Mario H. Barros, Catherine F. Clarke
J Biol Chem. 2020 May 1; 295(18): 6023–6042. Published online 2020 Mar 23. doi: 10.1074/jbc.RA119.012420
PMCID:
PMC7196636
AbstractArticlePDF–4.8M
9.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K
10.
Human COQ10A and COQ10B are distinct lipid-binding START domain proteins required for coenzyme Q function
Hui S. Tsui, Nguyen V. B. Pham, Brendan R. Amer, Michelle C. Bradley, Jason E. Gosschalk, Marcus Gallagher-Jones, Hope Ibarra, Robert T. Clubb, Crysten E. Blaby-Haas, Catherine F. Clarke
J Lipid Res. 2019 Jul; 60(7): 1293–1310. Published online 2019 May 2. doi: 10.1194/jlr.M093534
PMCID:
PMC6602128
AbstractArticlePDF–2.2M
11.
Coenzyme Q biosynthetic proteins assemble in a substrate-dependent manner into domains at ER–mitochondria contacts
Kelly Subramanian, Adam Jochem, Maxence Le Vasseur, Samantha Lewis, Brett R. Paulson, Thiruchelvi R. Reddy, Jason D. Russell, Joshua J. Coon, David J. Pagliarini, Jodi Nunnari
J Cell Biol. 2019 Apr 1; 218(4): 1353–1369. Published online 2019 Jan 23. doi: 10.1083/jcb.201808044
PMCID:
PMC6446851
AbstractArticlePDF–3.1M
12.
An isoprene lipid binding protein promotes eukaryotic coenzyme Q biosynthesis
Danielle C. Lohman, Deniz Aydin, Helaina C. Von Bank, Robert W. Smith, Vanessa Linke, Erin Weisenhorn, Molly T. McDevitt, Paul Hutchins, Emily M. Wilkerson, Benjamin Wancewicz, Jason Russell, Matthew S. Stefely, Emily T. Beebe, Adam Jochem, Joshua J. Coon, Craig A. Bingman, Matteo Dal Peraro, David J. Pagliarini
Mol Cell. Author manuscript; available in PMC 2020 Feb 21.
Published in final edited form as: Mol Cell. 2019 Feb 21; 73(4): 763–774.e10. Published online 2019 Jan 17. doi: 10.1016/j.molcel.2018.11.033
PMCID:
PMC6386619
AbstractArticlePDF–2.2M
13.
Recruitment of Cytosolic J-Proteins by TOM Receptors Promotes Mitochondrial Protein Biogenesis
Łukasz Opaliński, Jiyao Song, Chantal Priesnitz, Lena-Sophie Wenz, Silke Oeljeklaus, Bettina Warscheid, Nikolaus Pfanner, Thomas Becker
Cell Rep. 2018 Nov 20; 25(8): 2036–2043.e5. Published online 2018 Nov 20. doi: 10.1016/j.celrep.2018.10.083
PMCID:
PMC6280124
AbstractArticle
14.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
15.
Protein Moonlighting Revealed by Noncatalytic Phenotypes of Yeast Enzymes
Adriana Espinosa-Cantú, Diana Ascencio, Selene Herrera-Basurto, Jiewei Xu, Assen Roguev, Nevan J. Krogan, Alexander DeLuna
Genetics. 2018 Jan; 208(1): 419–431. Published online 2017 Nov 10. doi: 10.1534/genetics.117.300377
PMCID:
PMC5753873
AbstractArticlePDF–1.5M
16.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
17.
Integrative proteomics and biochemical analyses define Ptc6p as the Saccharomyces cerevisiae pyruvate dehydrogenase phosphatase
Xiao Guo, Natalie M. Niemi, Joshua J. Coon, David J. Pagliarini
J Biol Chem. 2017 Jul 14; 292(28): 11751–11759. Published online 2017 May 24. doi: 10.1074/jbc.M117.787341
PMCID:
PMC5512070
AbstractArticlePDF–2.1M
18.
Human COQ9 Rescues a coq9 Yeast Mutant by Enhancing Coenzyme Q Biosynthesis from 4-Hydroxybenzoic Acid and Stabilizing the CoQ-Synthome
Cuiwen H. He, Dylan S. Black, Christopher M. Allan, Brigitte Meunier, Shamima Rahman, Catherine F. Clarke
Front Physiol. 2017; 8: 463. Published online 2017 Jul 7. doi: 10.3389/fphys.2017.00463
PMCID:
PMC5500610
AbstractArticlePDF–1.4M
19.
Loss of Cardiolipin Leads to Perturbation of Acetyl-CoA Synthesis
Vaishnavi Raja, Amit S. Joshi, Guiling Li, Krishna Rao Maddipati, Miriam L. Greenberg
J Biol Chem. 2017 Jan 20; 292(3): 1092–1102. Published online 2016 Dec 9. doi: 10.1074/jbc.M116.753624
PMCID:
PMC5247643
AbstractArticlePDF–1.3M
20.
AarF Domain Containing Kinase 3 (ADCK3) Mutant Cells Display Signs of Oxidative Stress, Defects in Mitochondrial Homeostasis and Lysosomal Accumulation
Jason K. Cullen, Norazian Abdul Murad, Abrey Yeo, Matthew McKenzie, Micheal Ward, Kok Leong Chong, Nicole L. Schieber, Robert G. Parton, Yi Chieh Lim, Ernst Wolvetang, Ghassan J. Maghzal, Roland Stocker, Martin F. Lavin
PLoS One. 2016; 11(2): e0148213. Published online 2016 Feb 11. doi: 10.1371/journal.pone.0148213
Correction in:
PLoS One. 2016; 11(7): e0160162.
PMCID:
PMC4751082
AbstractArticlePDF–8.2M

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