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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105211373.

Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress

Andreas Hadjicharalambous, Alex J. Whale, Geylani Can, J. Mark Skehel, Jonathan M. Houseley, Philip Zegerman

Version 1. Wellcome Open Res. 2023; 8: 327. Published online 2023 Jul 26. doi: 10.12688/wellcomeopenres.19617.1

PMCID:: PMC10521137

Abstract Article PDF–4.0M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 101645715.

Widely spaced and divergent inverted repeats become a potent source of chromosomal rearrangements in long single-stranded DNA regions

Anissia Ait Saada, Wenying Guo, Alex B Costa, Jiaxin Yang, Jianrong Wang, Kirill S Lobachev

Nucleic Acids Res. 2023 May 8; 51(8): 3722–3734. Published online 2023 Mar 15. doi: 10.1093/nar/gkad153

PMCID:: PMC10164571

Abstract Article PDF–4.4M

Select item 98363486.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86365638.

Structural basis for the E3 ligase activity enhancement of yeast Nse2 by SUMO-interacting motifs

Nathalia Varejão, Jara Lascorz, Joan Codina-Fabra, Gemma Bellí, Helena Borràs-Gas, Jordi Torres-Rosell, David Reverter

Nat Commun. 2021; 12: 7013. Published online 2021 Dec 1. doi: 10.1038/s41467-021-27301-9

PMCID:: PMC8636563

Abstract Article PDF–3.6M

Select item 82879109.

Structure specific DNA recognition by the SLX1–SLX4 endonuclease complex

Xiang Xu, Mingzhu Wang, Jixue Sun, Zhenyu Yu, Guohong Li, Na Yang, Rui-Ming Xu

Nucleic Acids Res. 2021 Jul 21; 49(13): 7740–7752. Published online 2021 Jun 28. doi: 10.1093/nar/gkab542

PMCID:: PMC8287910

Abstract Article PDF–3.2M

Select item 805309410.

Structural parameters of palindromic repeats determine the specificity of nuclease attack of secondary structures

Anissia Ait Saada, Alex B Costa, Ziwei Sheng, Wenying Guo, James E Haber, Kirill S Lobachev

Nucleic Acids Res. 2021 Apr 19; 49(7): 3932–3947. Published online 2021 Mar 27. doi: 10.1093/nar/gkab168

PMCID:: PMC8053094

Abstract Article PDF–3.1M

Select item 784936811.

Esc2 orchestrates substrate-specific sumoylation by acting as a SUMO E2 cofactor in genome maintenance

Shibai Li, Jacob N. Bonner, Bingbing Wan, Stephen So, Ashley Mutchler, Leticia Gonzalez, Xiaoyu Xue, Xiaolan Zhao

Genes Dev. 2021 Feb 1; 35(3-4): 261–272. doi: 10.1101/gad.344739.120

PMCID:: PMC7849368

Abstract Article PDF–5.3M

Select item 780979612.

A new linear cyclin docking motif that mediates exclusively S‐phase CDK‐specific signaling

Ilona Faustova, Luka Bulatovic, Frida Matiyevskaya, Ervin Valk, Mihkel Örd, Mart Loog

EMBO J. 2021 Jan 15; 40(2): e105839. Published online 2020 Nov 19. doi: 10.15252/embj.2020105839

PMCID:: PMC7809796

Abstract Article PDF–1.9M

Select item 771875113.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 740746414.

C-Terminal HA Tags Compromise Function and Exacerbate Phenotypes of Saccharomyces cerevisiae Bloom’s Helicase Homolog Sgs1 SUMOylation-Associated Mutants

Matan Cohen, Michael Lichten

G3 (Bethesda) 2020 Aug; 10(8): 2811–2818. Published online 2020 Jun 15. doi: 10.1534/g3.120.401324

PMCID:: PMC7407464

Abstract Article PDF–1.3M

Select item 674505815.

Molecular basis for control of diverse genome stability factors by the multi-BRCT scaffold Rtt107

Bingbing Wan, Jian Wu, Xiangzhou Meng, Ming Lei, Xiaolan Zhao

Mol Cell. Author manuscript; available in PMC 2020 Jul 25.

Published in final edited form as: Mol Cell. 2019 Jul 25; 75(2): 238–251.e5. Published online 2019 Jul 16. doi: 10.1016/j.molcel.2019.05.035

PMCID:: PMC6745058

Abstract Article PDF–3.1M

Select item 671577416.

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis

Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos

Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022

PMCID:: PMC6715774

Abstract Article

Select item 661571017.

The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel

Nature. Author manuscript; available in PMC 2019 Jul 9.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.

PMCID:: PMC6615710

Abstract Article PDF–424K

Select item 630495818.

Sae2 antagonizes Rad9 accumulation at DNA double-strand breaks to attenuate checkpoint signaling and facilitate end resection

Tai-Yuan Yu, Michael T. Kimble, Lorraine S. Symington

Proc Natl Acad Sci U S A. 2018 Dec 18; 115(51): E11961–E11969. Published online 2018 Dec 3. doi: 10.1073/pnas.1816539115

PMCID:: PMC6304958

Abstract Article PDF–1.5M

Select item 621627719.

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro

EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992

PMCID:: PMC6216277

Abstract Article PDF–1.7M

Select item 621571320.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

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