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Items: 1 to 20 of 67

1.
Yeast Rim11 kinase responds to glutathione-induced stress by regulating the transcription of phospholipid biosynthetic genes
Taishi Yasukawa, Ryo Iwama, Yuriko Yamasaki, Naohisa Masuo, Yoichi Noda
Mol Biol Cell. 2024 Jan 1; 35(1): ar8. Published online 2023 Dec 14. doi: 10.1091/mbc.E23-03-0116
PMCID:
PMC10881166
AbstractArticlePDF–6.9M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking
Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan
J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047
PMCID:
PMC10798858
AbstractArticlePDF–6.4M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
6.
Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin
Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison
J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060
PMCID:
PMC10292210
AbstractArticlePDF–5.9M
7.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
8.
Effects of abolishing Whi2 on the proteome and nitrogen catabolite repression-sensitive protein production
Jennifer J Tate, Jana Marsikova, Libuse Vachova, Zdena Palkova, Terrance G Cooper
G3 (Bethesda) 2022 Mar; 12(3): jkab432. Published online 2021 Dec 17. doi: 10.1093/g3journal/jkab432
PMCID:
PMC9210300
AbstractArticlePDF–2.3M
9.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
10.
YPK9 and WHI2 Negatively Interact during Oxidative Stress
Florenal Joseph, Darach Miller, Oleg V. Evgrafov, William J. Chirico
Microorganisms. 2021 Dec; 9(12): 2584. Published online 2021 Dec 14. doi: 10.3390/microorganisms9122584
PMCID:
PMC8705791
AbstractArticlePDF–2.0M
11.
Overdominant Mutations Restrict Adaptive Loss of Heterozygosity at Linked Loci
Kaitlin J Fisher, Ryan C Vignogna, Gregory I Lang
Genome Biol Evol. 2021 Aug; 13(8): evab181. Published online 2021 Aug 7. doi: 10.1093/gbe/evab181
PMCID:
PMC8382679
AbstractArticlePDF–769K
12.
Suppressors of mRNA Decapping Defects Restore Growth Without Major Effects on mRNA Decay Rates or Abundance
Minseon Kim, Ambro van Hoof
Genetics. 2020 Dec; 216(4): 1051–1069. Published online 2020 Sep 30. doi: 10.1534/genetics.120.303641
PMCID:
PMC7768250
AbstractArticlePDF–2.2M
13.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
14.
The Whi2p-Psr1p/Psr2p complex regulates interference competition and expansion of cells with competitive advantage in yeast colonies
Jana Maršíková, Martina Pavlíčková, Derek Wilkinson, Libuše Váchová, Otakar Hlaváček, Ladislava Hatáková, Zdena Palková
Proc Natl Acad Sci U S A. 2020 Jun 30; 117(26): 15123–15131. Published online 2020 Jun 15. doi: 10.1073/pnas.1922076117
PMCID:
PMC7334569
AbstractArticlePDF–1.8M
15.
Heme, A Metabolic Sensor, Directly Regulates the Activity of the KDM4 Histone Demethylase Family and Their Interactions with Partner Proteins
Purna Chaitanya Konduri, Tianyuan Wang, Narges Salamat, Li Zhang
Cells. 2020 Mar; 9(3): 773. Published online 2020 Mar 22. doi: 10.3390/cells9030773
PMCID:
PMC7140707
AbstractArticlePDF–3.2M
16.
Unique genetic basis of the distinct antibiotic potency of high acetic acid production in the probiotic yeast Saccharomyces cerevisiae var. boulardii
Benjamin Offei, Paul Vandecruys, Stijn De Graeve, María R. Foulquié-Moreno, Johan M. Thevelein
Genome Res. 2019 Sep; 29(9): 1478–1494. doi: 10.1101/gr.243147.118
PMCID:
PMC6724677
AbstractArticlePDF–10M
17.
Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae
Sriram Vijayraghavan, Stanislav G. Kozmin, Pooja K. Strope, Daniel A. Skelly, Zhenguo Lin, John Kennell, Paul M. Magwene, Fred S. Dietrich, John H. McCusker
Genetics. 2019 Feb; 211(2): 773–786. Published online 2018 Nov 29. doi: 10.1534/genetics.118.301546
PMCID:
PMC6366917
AbstractArticlePDF–1.8M
18.
KCTD7 deficiency defines a distinct neurodegenerative disorder with a conserved autophagy-lysosome defect
Kyle A Metz, Xinchen Teng, Isabelle Coppens, Heather M. Lamb, Bart E. Wagner, Jill A. Rosenfeld, Xianghui Chen, Yu Zhang, Hee Jong Kim, Michael E. Meadow, Tim Sen Wang, Edda D. Haberlandt, Glenn W. Anderson, Esther Leshinsky-Silver, Weimin Bi, Thomas C. Markello, Marsha Pratt, Nawal Makhseed, Adolfo Garnica, Noelle R. Danylchuk, Thomas A. Burrow, Parul Jayakar, Dianalee McKnight, Satish Agadi, Hatha Gbedawo, Christine Stanley, Michael Alber, Isabelle Prehl, Katrina Peariso, Min Tsui Ong, Santosh R Mordekar, Michael J Parker, Daniel Crooks, Pankaj B. Agrawal, Gerard T. Berry, Tobias Loddenkemper, Yaping Yang, Gustavo H.B. Maegawa, Abdel Aouacheria, Janet G. Markle, James A. Wohlschlegel, Adam L. Hartman, J. Marie Hardwick
Ann Neurol. Author manuscript; available in PMC 2019 Nov 8.
Published in final edited form as: Ann Neurol. 2018 Nov; 84(5): 766–780. Published online 2018 Nov 8. doi: 10.1002/ana.25351
PMCID:
PMC6295419
AbstractArticlePDF–4.4M
19.
Whi2 is a conserved negative regulator of TORC1 in response to low amino acids
Xianghui Chen, Guiqin Wang, Yu Zhang, Margaret Dayhoff-Brannigan, Nicola L. Diny, Mingjun Zhao, Ge He, Cierra N. Sing, Kyle A. Metz, Zachary D. Stolp, Abdel Aouacheria, Wen-Chih Cheng, J. Marie Hardwick, Xinchen Teng
PLoS Genet. 2018 Aug; 14(8): e1007592. Published online 2018 Aug 24. doi: 10.1371/journal.pgen.1007592
PMCID:
PMC6126876
AbstractArticlePDF–11M
20.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M

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